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Report for CCDS84466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84466.1 Public Mus musculus 2 Frmd4a 23 108 98 CCDS HistoryNCBI Gene:209630Re-query CCDS DB by CCDS ID:84466.1Re-query CCDS DB by GeneID:209630See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84466.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177457.7 ENSMUSP00000134788.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177457.7Link to Ensembl Protein Viewer:ENSMUSP00000134788.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177457Re-query CCDS DB by Protein ID:ENSMUSP00000134788
Original member Current member NCBI NM_001347086.1 NP_001334015.1 Accepted alive Link to Nucleotide Sequence:NM_001347086.1Link to Protein Sequence:NP_001334015.1Re-query CCDS DB by Nucleotide ID:NM_001347086Re-query CCDS DB by Protein ID:NP_001334015Link to BLAST:NP_001334015.1

Chromosomal Locations for CCDS 84466.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 4018538 4018582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4431199 4431264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4473121 4473215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4484040 4484132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4497989 4498073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4513789 4513845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4514997 4515019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4529792 4529875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4534546 4534611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4535173 4535230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4537239 4537325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4560214 4560290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4566052 4566190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4572298 4572439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4586361 4586494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4590620 4590742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4594539 4594767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4597338 4597394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4601115 4601355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4602115 4602279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4603377 4604251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4605970 4606066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4607999 4608068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3108 nt):
ATGGCAGTGCAGCTGGTGCCGGACTCCGCTCTCAGCCTGCTGATGATGACGGAGGGCCGTCGATGTCAAG
TA
CATCTCCTTGATGACAGGAAGCTGGAGCTGCTAGTACAGCCCAAGCTTTTGGCCAAGGAGCTTCTTGA
C
CTCGTGGCCTCTCATTTCAACCTGAAGGAGAAGGAGTACTTTGGAATAGCATTCACAGATGAGACGGGA
CAC
TTGAATTGGCTCCAGCTCGATCGGAGAGTCCTGGAGCATGACTTCCCCAAAAAGTCTGGGCCGGTGG
TT
CTGTACTTCTGTGTCAGATTCTACATAGAGAGCATCTCCTACCTGAAGGACAATGCTACCATTGAGCT
C
TTCTTCCTGAATGCCAAGTCCTGCATCTACAAGGAGCTGATTGATGTTGACAGTGAAGTGGTATTTGAA
TTA
GCTTCCTATATTTTACAGGAAGCAAAAGGAGATTTCTCTAGCAATGAGGTGGTGAGAAGTGATCTGA
AA
AAGCTGCCAGCGCTACCCACCCAAGCCCTGAAGGAACACCCCTCCCTGGCCTACTGTGAAGACAGAGT
C
ATTGAGTACTACAAGAAGCTGAATGGCCAGACGAGGGGACAAGCAATCGTGAACTACATGAGTATCGTG
GAG
TCTCTGCCAACCTACGGTGTTCACTATTATGCAGTGAAAGACAAGCAGGGGATACCATGGTGGCTGG
GA
CTGAGCTACAAAGGAATTTTCCAGTATGACTACCATGATAAAGTGAAGCCAAGGAAGATATTTCAATG
G
AGACAGTTGGAGAATCTGTATTTCAGGGAAAAGAAGTTTTCCGTGGAAGTTCATGACCCTCGCAGGGCT
TCA
GTGACCAGGAGGACTTTTGGGCACAGTGGCATTGCCGTGCACACCTGGTATGCGTGTCCGGCATTGA
TC
AAGTCCATTTGGGCGATGGCTATTAGCCAGCATCAGTTCTATCTGGACAGAAAGCAGAGTAAGTCCAA
G
ATCCATGCGGCCCGAAGTCTGAGCGAGATCGCCATTGACCTGACGGAAACAGGGACCCTGAAGACCTCA
AAG
CTGGCCAACATGGGGAGCAAGGGGAAGATCATCAGCGGGAGCAGTGGGAGTCTGCTGTCCTCAGGTT
CT
CAGGAATCAGATAGCTCGCAGTCGGCCAAGAAAGACATGTTGGCTGCCTTGAAATCCAGGCAGGAAGC
T
CTGGAGGAGACGCTGCGCCAGAGGCTGGAGGAACTGAAGAGATTGTGTCTCCGGGAAGCTGAACTCACA
GGA
AAATTGCCTGTGGAATATCCCCTGGATCCAGGCGAGGAACCACCTATTGTTCGGAGGAGAATTGGAA
CA
GCCTTCAAGCTGGATGAACAAAAAATCCTGCCTAAAGGAGAGGAAGCTGAGCTGGAACGCCTGGAACG
A
GAGTTTGCGATTCAGTCCCAGATCACAGAGGCCGCCCGCCGTCTAGCCAGTGACCCCAATGTCAGCAAA
AAA
CTGAAGAAGCAAAGGAAGACCTCTTATTTGAATGCACTGAAGAAGCTGCAGGAGATTGAAAATGCAA
TC
AACGAGAACCGCATCAAGTCAGGGAAGAAACCCACCCAGAGGGCTTCACTTGTCATCGATGATGGAAA
T
ATCGCCAGCGAAGACAGCTCTCTCTCGGATGCCCTCGTTCTGGAAGATGAAGACTCTCAGGTTACCAGC
ACA
ATATCCCCCTTACAGTCGCCACACAAGGGACTCCCTCCTCGGCCACCTTCATCACACAACAGGCCTC
CT
CCCCCACAGTCCCTGGAGGGACTCAGGCAGCTGCACTATCACCGTACCGACTATGACAAGTCACCCTT
A
AAGCCCAAAATGTGGAGCGAGTCATCTTTAGATGAGCCTTATGAGAAGGTGAAGAAACGCTCCTCCCAC
GGC
CATTCCAGCAGCCACAAGCGCTTCCCCAGCACAGGAAGCTGTACCGAGGCAGGAGTAAGCAGCTCCT
TG
CAGAACAGTCCCATCCGAAGCCTCCCACATTGGAATTCCCAGTCTAGCATGCCATCCACCCCAGACCT
G
CGCGTCCGGAGTCCCCACTATGTTCATTCCACAAGGTCAGTGGACATCAGCCCCACGAGACTGCACAGC
CTT
GCACTGCACTTTAGGCATCGAAGCTCCAGCCTGGAGTCCCAGGGCAAGCTCCTGGGCTCGGAGAACG
AC
ACCGGAAGCCCCGACTTCTACACCCCGAGGACTCGTAGCAGCAATGGCTCAGACCCCATGGACGACTG
C
TCGTCCTGCACCAGCCACTCGAGCTCAGAGCACTACTACCCAGCACAGATGAACGCCAACTACTCAACG
CTG
GCTGAGGACTCGCCGTCCAAGGCGCGGCAGCGACAGCGGCAGAGGCAGCGGGCAGCAGGCGCCCTGG
GC
TCAGCCAGCTCTGGCAGCATGCCCAACCTGGCGGCCCGCAGCGGGGCTGCAAGCACTGGAGGTGGCGT
G
TACCTGCACAGCCAGAGCCAGCCCAGCTCTCAGTACCGCATCAAGGAGTACCCACTATATATCGAGGGC
AGT
GCCACACCCGTGGTGGTACGCAGCCTGGAGAGCGACCAGGAGGGCCACTACAGCGTCAAAGCGCAGT
TT
AAGACCTCCAACTCTTACACAGCTGGCGGCCTGTTCAAAGAGAGCTGGCGCGGGGGTGGCGACGAGGG
G
GATGCAGGCCGCCTTACACCATCTCGGTCTCAGATCCTGCGGACTCCTTCGTTGGGGCGTGACGGCGCC
CAC
GACAAAGGCTCCGGCCGTGCCGCCGTGTCTGATGAGCTGCGCCAGTGGTACCAGCGCTCCACAGCCT
CG
CATAAGGAGCACAGCCGTCTGTCACACACCAGCTCCACCTCCTCGGACAGCGGCTCTCAGTACAGCAC
C
TCTTCCCAGAGCACCTTCGTGGCGCACAGCAGGGTCACCAGGATGCCCCAGATGTGCAAGGCCACGTCA
G
CT
GCCTTACCTCAAAGCCAGAGAAGCTCAACACCGTCCAGTGAAATTGGAGCCACCCCACCAAGCAGCC
CC
CACCACATCCTGACCTGGCAGACTGGAGAAGCAACAGAAAACTCTCCCATCATGGATGGGTCTGAGTC
T
CCAACACACCAAAGTACTGATGAATAG


Translation (1035 aa):
MAVQLVPDSALSLLMMTEGRRCQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIAFTDETG
H
LNWLQLDRRVLEHDFPKKSGPVVLYFCV
RFYIESISYLKDNATIELFFLNAKSCIYKELIDVDSEVVFE
L
ASYILQ
EAKGDFSSNEVVRSDLKKLPALPTQALKEHPSLAYCEDRVIEYYKKLNGQTRGQAIVNYMSIV
E
SLPTYGVHYYAVK
DKQGIPWWLGLSYKGIFQYDYHDKVKPRKIFQWRQLENLYFREKKFSVEVHDPRRA
S
VTRRTFGHSGIAVHTWYACPALIKSIWAMAISQHQFYLDRKQSK
SKIHAARSLSEIAIDLTETGTLKTS
K
LANMGSKGKIISGSSGSLLSS
GSQESDSSQSAKKDMLAALKSRQEALEETLRQRLEELKRLCLREAELT
G
KLPVEYPLDPGEEPPIVRRRIGTAFKLDEQKILPKGE
EAELERLEREFAIQSQITEAARRLASDPNVSK
K
LKKQRKTSYLNALKKLQEIENAINENRIKSGKKPTQRASLVID
DGNIASEDSSLSDALVLEDEDSQVTS
T
ISPLQSPHKGLPPRPPSSHNRPPPPQSLEGLRQLHYHRTDYDKSPLKPKMWSESSLDEPYEKVKKRSSH
G
HS
SSHKRFPSTGSCTEAGVSSSLQNSPIRSLPHWNSQSSMPSTPDLRVRSPHYVHSTRSVDISPTRLHS
L
ALHFRHRSSSLESQGKLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTSHSSSEHYYPAQMNANYST
L
AEDSPSKARQRQRQRQRAAGALGSASSGSMPNLAARSGAASTGGGVYLHSQSQPSSQYRIKEYPLYIEG
S
ATPVVVRSLESDQEGHYSVKAQFKTSNSYTAGGLFKESWRGGGDEGDAGRLTPSRSQILRTPSLGRDGA
H
DKGSGRAAVSDELRQWYQRSTASHKEHSRLSHTSSTSSDSGSQYSTSSQSTFVAHSRVTRMPQMCKATS

A
ALPQSQRSSTPSSEIGATPPSSPHHILTWQTGEATENSPIMDGSESPTHQSTDE



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser