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Report for CCDS84606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84606.1 Public Mus musculus 2 Oprl1 23 108 98 CCDS HistoryNCBI Gene:18389Re-query CCDS DB by CCDS ID:84606.1Re-query CCDS DB by GeneID:18389See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108763.7 ENSMUSP00000104394.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108763.7Link to Ensembl Protein Viewer:ENSMUSP00000104394.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108763Re-query CCDS DB by Protein ID:ENSMUSP00000104394
Original member NCBI NM_001318922.1 NP_001305851.1 Updated not alive Link to Nucleotide Sequence:NM_001318922.1Link to Protein Sequence:NP_001305851.1Re-query CCDS DB by Nucleotide ID:NM_001318922Re-query CCDS DB by Protein ID:NP_001305851
Current member NCBI NM_001318922.2 NP_001305851.1 Accepted alive Link to Nucleotide Sequence:NM_001318922.2Link to Protein Sequence:NP_001305851.1Re-query CCDS DB by Nucleotide ID:NM_001318922Re-query CCDS DB by Protein ID:NP_001305851Link to BLAST:NP_001305851.1

Chromosomal Locations for CCDS 84606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181715799 181715946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181716502 181716535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181718377 181718732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181718814 181719337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGAGACCGTACCCCATCACCTGCTCCTCAATGCTAGCCACAGTGCCTTCCTGCCCCTTGGACTCAAGGT
CACCATCGTGGGGCTCTACTTGGCTGTGTGCATCGGGGGGCTCCTGGGGAACTGCCTCGTCATGTATGTC
ATCCTCAGCTGGGAGGGCATTGAGGGGAACTGGAGACAGCAGGCACACCAAGATGAAGACTGCTACCAAC
ATTTACATATTTAATCTGGCACTGGCTGATACCCTGGTCTTGCTGACACTGCCCTTCCAGGGCACAGACA
TCCTTCTGGGCTTCTGGCCATTTGGGAATGCACTGTGCAAGACGGTCATTGCTATCGACTACTACAACAT
GTTTACCAGCACTTTCACTTTGACTGCCATGAGTGTAGACCGTTATGTAGCTATCTGCCACCCTATCCGT
GCCCTTGATGTTCGGACATCCAGTAAAGCCCAGGCCGTTAATGTGGCCATATGGGCCCTGGCTTCGGTGG
TTGGTGTTCCTGTTGCCATCATGGGCTCAGCACAAGTGGAGGATGAAGAGATCGAGTGCCTGGTGGAGAT
CCCCGCCCCTCAGGACTATTGGGGCCCTGTATTTGCCATCTGCATCTTCCTTTTTTCCTTCATCATCCCG
GTTCTGATCATCTCTGTCTGCTACAGCCTCATGATTCGACGACTTCGTGGTGTCCGGCTGCTTTCAGGCT
CCCGAGAGAAGGACCGGAACCTGCGACGCATCACACGGCTGGTACTGGTAGTTGTGGCTGTGTTTGTGGG
CTGCTGGACACCTGTGCAGGTCTTTGTCCTGGTTCAAGGACTGGGTGTTCAGCCAGGTAGTGAGACTGCA
GTAGCCATTCTGCGCTTCTGCACAGCCCTGGGCTATGTCAACAGTTGTCTCAATCCCATTCTCTATGCTT
TCTTGGATGAGAACTTCAAGGCCTGCTTTAGAAAGTTCTGCTGTGCTTCTGCCCTGCACCGGGAGATGCA
GGTTTCTGATCGTGTGCGCAGCATTGCCAAGGATGTAGGCCTTGGTTGCAAGACCTCTGAGACAGTACCA
CGGCCGGCATGA

Translation (353 aa):
MRPYPITCSSMLATVPSCPLDSRSPSWGSTWLCASGGSWGTASSCMSSSAGRALRGTGDSRHTKMKTATN
IYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIR
ALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPAPQDYWGPVFAICIFLFSFIIP
VLIISVCYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLVQGLGVQPGSETA
VAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALHREMQVSDRVRSIAKDVGLGCKTSETVP
RPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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