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Report for CCDS84806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84806.1 Public Mus musculus 4 Kdm1a 23 108 98 CCDS HistoryNCBI Gene:99982Re-query CCDS DB by CCDS ID:84806.1Re-query CCDS DB by GeneID:99982See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105847.7 ENSMUSP00000101473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105847.7Link to Ensembl Protein Viewer:ENSMUSP00000101473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105847Re-query CCDS DB by Protein ID:ENSMUSP00000101473
Original member Current member NCBI NM_001347221.1 NP_001334150.1 Accepted alive Link to Nucleotide Sequence:NM_001347221.1Link to Protein Sequence:NP_001334150.1Re-query CCDS DB by Nucleotide ID:NM_001347221Re-query CCDS DB by Protein ID:NP_001334150Link to BLAST:NP_001334150.1

Chromosomal Locations for CCDS 84806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136550848 136551033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136551872 136552018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136552461 136552588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136553796 136553910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136554213 136554400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136555173 136555305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136557642 136557753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136558498 136558571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136559173 136559307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136560323 136560413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136561018 136561160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136568573 136568667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136570458 136570539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136572218 136572324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136573073 136573165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136574025 136574103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136577071 136577204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136582040 136582099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136592965 136593130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136602232 136602585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2622 nt):
ATGTTGTCTGGGAAGAAGGCGGCGGCGGCGGCAGCGGCAGCGGCGGCGGCGGCGGCTGCTGGGACCGAGG
CCGGGTCCGGGGCGGCGGGCGGTGCCGAGAACGGCTCTGAGGTGGCCGCGCCGCCCGCGGGCCTGACGGG
CCCCACCGACATGGCTACGGGGGCGGCGGGCGAGCGCACTCCCCGAAAGAAGGAGCCTCCGCGGGCCTCG
CCGCCCGGGGGCCTAGCCGAGCCGCCGGGGTCTGCTGGGCCCCAGGCGGGGCCCACAGCCGGGCCCGGCT
CCGCGACGCCCATGGAGACCGGAATAGCCGAGACCCCGGAGGGCCGACGGACCAGCCGGCGCAAGCGGGC
CAAGGTAGAATACAGAGAAATGGATGAAAGCTTGGCCAACCTCTCAGAAGATGAATATTATTCGGAAGAA
GAAAGAAATGCTAAAGCAGAGAAGGAAAAGAAGCTTCCCCCACCACCTCCTCAAGCCCCACCTGAGGAAG
AAAATGAAAGTGAGCCGGAAGAGCCGTCTGGGCAAGCAGGAGGACTTCAAGACGACAGTTCTGGAGGGTA
TGGAGACGGCCAAGCATCAGGTGTGGAGGGTGCAGCTTTTCAAAGCCGACTTCCCCATGACCGAATGACC
TCTCAGGAAGCAGCCTGTTTCCCAGACATCATCAGTGGGCCTCAGCAGACACAGAAGGTTTTTCTGTTCA
TCAGGAATCGCACATTGCAGTTATGGCTGGACAACCCAAAGATCCAGCTGACGTTTGAAGCCACTCTCCA
GCAGCTGGAAGCGCCTTACAACAGCGATACTGTGCTTGTCCACCGAGTTCACAGTTACTTAGAGCGCCAT
GGTCTTATCAACTTCGGCATCTACAAGAGGATAAAACCCTTACCAATTAAAAAGACAGGAAAGGTGATTA
TTATAGGTTCAGGTGTTTCTGGCTTGGCAGCAGCTCGACAGCTACAGAGTTTTGGGATGGATGTCACACT
TCTGGAAGCCAGGGATCGAGTAGGTGGACGAGTTGCTACATTTCGAAAAGGAAACTATGTAGCTGATCTT
GGCGCCATGGTTGTAACAGGTCTTGGAGGGAATCCCATGGCTGTCGTCAGCAAACAAGTAAATATGGAAC
TGGCCAAGATCAAGCAAAAATGCCCACTTTATGAAGCCAATGGACAAGCTGTTCCAAAAGAAAAAGATGA
AATGGTAGAACAAGAATTTAACCGGTTGCTAGAAGCCACTTCTTACCTTAGTCACCAGTTAGACTTCAAC
GTCCTCAATAATAAACCTGTATCCCTTGGCCAGGCATTGGAGGTTGTCATTCAGCTGCAAGAAAAGCATG
TCAAAGATGAGCAGATTGAACATTGGAAGAAGATAGTGAAAACTCAGGAGGAGTTGAAAGAGCTTCTTAA
TAAGATGGTAAATTTGAAGGAGAAAATTAAAGAGCTCCATCAGCAATACAAAGAAGCTTCAGAAGTGAAG
CCGCCCAGAGATATCACAGCCGAGTTCCTGGTGAAGAGCAAGCACAGGGACCTGACTGCCCTCTGCAAGG
AATATGATGAATTAGCTGAAACACAAGGAAAGCTAGAAGAAAAACTTCAAGAATTGGAAGCCAATCCCCC
AAGTGATGTATACCTCTCATCAAGAGACAGACAAATACTTGACTGGCATTTTGCAAATCTTGAATTTGCC
AACGCCACACCTCTCTCTACCCTCTCTCTTAAACATTGGGATCAGGATGATGACTTTGAGTTTACTGGAA
GCCACCTGACAGTAAGGAATGGCTACTCATGTGTGCCTGTGGCTTTAGCTGAAGGCTTGGACATTAAACT
GAACACAGCAGTGCGGCAGGTTCGCTACACAGCCTCAGGATGTGAAGTGATTGCTGTGAACACACGTTCC
ACAAGTCAAACCTTTATTTATAAGTGTGATGCAGTTCTCTGTACACTTCCTTTGGGAGTGTTGAAGCAGC
AGCCACCAGCTGTTCAGTTTGTGCCACCTCTTCCTGAGTGGAAAACATCTGCAGTCCAAAGGATGGGATT
TGGCAACCTTAACAAGGTGGTGTTATGCTTTGACCGTGTGTTCTGGGACCCAAGTGTCAATTTGTTTGGG
CACGTTGGCAGTACAACTGCTAGCAGGGGTGAGCTCTTCCTCTTCTGGAACCTATATAAAGCTCCAATAC
TATTGGCCCTGGTAGCAGGAGAAGCTGCTGGCATTATGGAGAACATTAGTGATGATGTGATTGTCGGCCG
GTGCCTGGCCATTCTCAAAGGGATTTTTGGCAGCAGTGCAGTCCCACAGCCCAAGGAAACTGTGGTATCT
CGTTGGCGTGCTGATCCGTGGGCCCGGGGCTCCTATTCTTATGTGGCTGCAGGATCCTCTGGAAATGACT
ATGATTTAATGGCTCAGCCGATCACTCCTGGCCCCTCAATTCCAGGTGCCCCACAGCCAATCCCAAGACT
CTTCTTTGCTGGAGAACACACAATCCGGAACTACCCAGCTACAGTCCATGGTGCTCTGTTGAGTGGGCTT
CGAGAAGCAGGAAGGATTGCCGACCAGTTTTTGGGAGCCATGTACACTTTGCCTCGTCAGGCCACACCAG
GTGTCCCTGCACAGCAGTCCCCAAGTATGTGA

Translation (873 aa):
MLSGKKAAAAAAAAAAAAAAGTEAGSGAAGGAENGSEVAAPPAGLTGPTDMATGAAGERTPRKKEPPRAS
PPGGLAEPPGSAGPQAGPTAGPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEE
ERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQDDSSGGYGDGQASGVEGAAFQSRLPHDRMT
SQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERH
GLINFGIYKRIKPLPIKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADL
GAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFN
VLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVK
PPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFA
NATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRS
TSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFG
HVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVS
RWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGL
REAGRIADQFLGAMYTLPRQATPGVPAQQSPSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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