NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, May 21, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84956.1 Public Mus musculus 5 Morn3 23 108 98 CCDS HistoryNCBI Gene:74890Re-query CCDS DB by CCDS ID:84956.1Re-query CCDS DB by GeneID:74890See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84956.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045843.14 ENSMUSP00000041714.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045843.14Link to Ensembl Protein Viewer:ENSMUSP00000041714.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045843Re-query CCDS DB by Protein ID:ENSMUSP00000041714
Original member Current member EBI ENSMUST00000132775.7 ENSMUSP00000120199.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132775.7Link to Ensembl Protein Viewer:ENSMUSP00000120199.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132775Re-query CCDS DB by Protein ID:ENSMUSP00000120199
Original member Current member NCBI NM_001347456.1 NP_001334385.1 Accepted alive Link to Nucleotide Sequence:NM_001347456.1Link to Protein Sequence:NP_001334385.1Re-query CCDS DB by Nucleotide ID:NM_001347456Re-query CCDS DB by Protein ID:NP_001334385Link to BLAST:NP_001334385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334385.1 169 Q8C5T4-2 169 100% 0 0

Chromosomal Locations for CCDS 84956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123037314 123037360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123039257 123039416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123041083 123041240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123046631 123046775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGCCGGTCACTAAGTGTCCAAGGAAAGTAGAGCCGCCGTGGAAAGGGTGGGACCGGAAAGCCCAGAAGA
ACGGACTGAGACACCAAGTGTTTGCTGTGAACGGCGATCACTACGTGGGCGAATGGAAGGGCAACTTGAA
ACACGGGAAAGGAACACAGGTCTGGAAGAAGAGTGGTGCGGTCTATGAAGGGGATTGGAAGTTTGGGAAG
CGAGATGGTTATGGATCCCTCAGTCATCCTGACCCAGAGACCGGAAAACTCAGGAGAGTGTATTCAGGCT
GGTGGAAAGGCGATAAGAAATCGGGCTATGGGATCCAGTTTTTCGGACCCAAGGAGTATTACGAGGGTGA
GTGGTGTAACAACCAGCGCAGCGGGTGGGGACGCATGTACTACAACAACGGCGACATCTACGAGGGCCAG
TGGCAGAACGACAAGCCTGAAGGGGAGGGCATGTTGCGGCTGAGTGGAGATTCTAGACCCAGATGGTGTG
CTGAAGGAAGCGTTGGATAA

Translation (169 aa):
MPVTKCPRKVEPPWKGWDRKAQKNGLRHQVFAVNGDHYVGEWKGNLKHGKGTQVWKKSGAVYEGDWKFGK
RDGYGSLSHPDPETGKLRRVYSGWWKGDKKSGYGIQFFGPKEYYEGEWCNNQRSGWGRMYYNNGDIYEGQ
WQNDKPEGEGMLRLSGDSRPRWCAEGSVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH