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Report for CCDS8523.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8523.2 Public Homo sapiens 12 PARP11 24 110 108 CCDS HistoryNCBI Gene:57097Re-query CCDS DB by CCDS ID:8523.2Re-query CCDS DB by GeneID:57097See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 8523.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8523.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000228820.9 ENSP00000228820.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000228820.9Link to Ensembl Protein Viewer:ENSP00000228820.4Re-query CCDS DB by Nucleotide ID:ENST00000228820Re-query CCDS DB by Protein ID:ENSP00000228820
Original member Current member NCBI NM_020367.6 NP_065100.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020367.6Link to Protein Sequence:NP_065100.2Re-query CCDS DB by Nucleotide ID:NM_020367Re-query CCDS DB by Protein ID:NP_065100Link to BLAST:NP_065100.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065100.2 338 Q9NR21-4 338 100% 0 0

Chromosomal Locations for CCDS 8523.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 3812123 3812439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3814037 3814188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3821873 3822003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3822085 3822157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3826158 3826233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3828910 3829030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3829890 3830018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3873212 3873229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGTGGGAAGCGAATCCAGAGATGTTTCACAAAGCAGAAGAATTATTTTCTAAAACAACAAACAATGAAG
TGGATGACATGGACACGTCAGATACCCAGTGGGGCTGGTTTTACTTGGCAGAATGTGGGAAGTGGCACAT
GTTTCAGCCGGATACCAACAGTCAGTGTTCAGTTAGCAGTGAAGATATCGAAAAAAGCTTCAAAACAAAC
CCTTGTGGCTCCATTTCTTTTACTACTTCCAAATTCAGCTACAAGATAGACTTTGCAGAAATGAAGCAAA
TGAATCTCACCACTGGAAAGCAGCGCTTAATAAAAAGAGCCCCCTTTTCTATCAGTGCTTTCAGTTACAT
CTGTGAAAACGAGGCCATCCCTATGCCACCACACTGGGAGAATGTGAATACTCAAGTACCATATCAGCTT
ATTCCTCTGCACAATCAAACACATGAATATAATGAAGTTGCTAATCTCTTTGGGAAGACGATGGATCGCA
ACCGAATTAAAAGAATTCAGAGAATTCAAAACCTAGATTTGTGGGAGTTCTTTTGCAGGAAAAAGGCTCA
GCTCAAGAAAAAAAGAGGTGTGCCTCAGATTAATGAACAAATGCTGTTTCATGGTACCAGCAGTGAATTT
GTGGAAGCAATCTGCATTCATAACTTTGATTGGAGAATAAATGGTATACATGGTGCTGTCTTTGGAAAAG
GAACCTATTTTGCTAGAGATGCTGCTTATTCCAGTCGTTTCTGCAAAGATGACATAAAGCATGGGAACAC
ATTCCAAATTCATGGTGTCAGCTTGCAACAGCGGCATCTGTTTAGAACATATAAATCTATGTTTCTTGCT
CGAGTGCTAATTGGAGATTACATAAACGGAGACTCCAAATACATGCGACCTCCTTCCAAAGACGGGAGCT
ATGTGAATTTATATGACAGCTGTGTGGATGATACCTGGAACCCAAAGATCTTTGTGGTTTTTGATGCCAA
CCAAATCTATCCTGAGTACTTGATAGACTTTCATTGA

Translation (338 aa):
MWEANPEMFHKAEELFSKTTNNEVDDMDTSDTQWGWFYLAECGKWHMFQPDTNSQCSVSSEDIEKSFKTN
PCGSISFTTSKFSYKIDFAEMKQMNLTTGKQRLIKRAPFSISAFSYICENEAIPMPPHWENVNTQVPYQL
IPLHNQTHEYNEVANLFGKTMDRNRIKRIQRIQNLDLWEFFCRKKAQLKKKRGVPQINEQMLFHGTSSEF
VEAICIHNFDWRINGIHGAVFGKGTYFARDAAYSSRFCKDDIKHGNTFQIHGVSLQQRHLFRTYKSMFLA
RVLIGDYINGDSKYMRPPSKDGSYVNLYDSCVDDTWNPKIFVVFDANQIYPEYLIDFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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