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Report for CCDS85378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85378.1 Public Mus musculus 7 Lmo1 23 108 98 CCDS HistoryNCBI Gene:109594Re-query CCDS DB by CCDS ID:85378.1Re-query CCDS DB by GeneID:109594See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85378.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000207178.1 ENSMUSP00000146752.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207178.1Link to Ensembl Protein Viewer:ENSMUSP00000146752.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207178Re-query CCDS DB by Protein ID:ENSMUSP00000146752
Original member NCBI NM_001302205.1 NP_001289134.1 Updated not alive Link to Nucleotide Sequence:NM_001302205.1Link to Protein Sequence:NP_001289134.1Re-query CCDS DB by Nucleotide ID:NM_001302205Re-query CCDS DB by Protein ID:NP_001289134
Current member NCBI NM_001302205.2 NP_001289134.1 Accepted alive Link to Nucleotide Sequence:NM_001302205.2Link to Protein Sequence:NP_001289134.1Re-query CCDS DB by Nucleotide ID:NM_001302205Re-query CCDS DB by Protein ID:NP_001289134Link to BLAST:NP_001289134.1

Chromosomal Locations for CCDS 85378.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 109138871 109138976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109140582 109140707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109143456 109143669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 109174938 109174959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGTTTTGGACCAAGAGGACGGTGTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACAGAAGGGCTGCG
CAGGCTGCAACCGCAAGATCAAGGACCGGTACCTGCTGAAGGCACTGGACAAGTACTGGCATGAGGACTG
CCTCAAGTGTGCCTGCTGTGACTGTCGCCTGGGCGAGGTGGGCTCCACTCTCTACACCAAGGCCAACCTC
ATCCTGTGCCGGCGTGACTACCTGAGGCTTTTTGGCACCACAGGAAACTGTGCTGCCTGCAGCAAGCTGA
TCCCAGCTTTTGAGATGGTGATGCGGGCCCGAGACAATGTGTATCACCTTGACTGCTTCGCCTGCCAGCT
CTGCAATCAGAGATTTTGCGTGGGAGACAAATTCTTCCTGAAGAACAACATGATCTTGTGCCAGGTGGAC
TATGAGGAGGGGCATCTCAATGGCACCTTTGAATCCCAGGTTCAGTAA

Translation (155 aa):
MVLDQEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANL
ILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQVD
YEEGHLNGTFESQVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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