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Report for CCDS85446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85446.1 Public Mus musculus 7 Ptpre 23 108 98 CCDS HistoryNCBI Gene:19267Re-query CCDS DB by CCDS ID:85446.1Re-query CCDS DB by GeneID:19267See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000209979.1 ENSMUSP00000147613.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209979.1Link to Ensembl Protein Viewer:ENSMUSP00000147613.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209979Re-query CCDS DB by Protein ID:ENSMUSP00000147613
Original member Current member NCBI NM_001316681.1 NP_001303610.1 Accepted alive Link to Nucleotide Sequence:NM_001316681.1Link to Protein Sequence:NP_001303610.1Re-query CCDS DB by Nucleotide ID:NM_001316681Re-query CCDS DB by Protein ID:NP_001303610Link to BLAST:NP_001303610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303610.1 642 P49446-2 642 100% 0 0

Chromosomal Locations for CCDS 85446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 135651980 135652014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135652090 135652163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135653893 135654029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135659053 135659143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135663244 135663320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135663939 135663975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135664987 135665084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135667551 135667670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135668997 135669160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135669722 135669857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135670699 135670848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135671108 135671201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135672745 135672821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135674248 135674382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135678205 135678330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135679093 135679259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135681552 135681687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135683232 135683306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGAGCAGCAGAAAGAACTTTTCCCGGCTCACCTGGTTCCGGAAGCAGAGGAAGGCCGTGGTCAGCAGCA
ACGACAAGAAAATGCCTAACGGGATCTTAGAAGAGCAAGAGCAGCAGAGAGTGATGCTGCTGAGCAGATC
TCCATCAGGCCCCAAGAAGTTCTTCCCCATCCCCGTGGAGCACCTGGAGGAGGAGATCCGGGTGAGATCT
GCGGATGACTGCAAGCGATTCCGAGAGGAGTTCAATTCATTGCCATCTGGACACATACAAGGAACCTTTG
AACTAGCAAATAAAGAAGAAAACAGAGAAAAAAACAGATACCCCAACATTCTGCCCAATGATCATTGCAG
AGTGATTTTGAGCCAAGTGGATGGAATCCCCTGCTCTGACTACATTAATGCTTCCTACATCGATGGCTAC
AAAGAAAAGAACAAATTCATAGCAGCTCAAGGCCCTAAGCAGGAGACAGTGAATGACTTCTGGAGAATGG
TCTGGGAGCAAAGGTCAGCCACCATCGTCATGTTGACGAACCTGAAGGAGAGGAAGGAGGAGAAGTGCTA
CCAGTACTGGCCAGACCAGGGCTGTTGGACCTACGGCAACATCCGGGTGTGTGTAGAGGACTGCGTGGTC
CTGGTGGATTACACGATCCGAAAGTTCTGCATCCATCCGCAACTCCCAGACAGCTGCAAAGCCCCGCGGC
TGGTCTCACAGCTGCACTTCACCAGCTGGCCTGACTTCGGGGTGCCGTTTACCCCCATCGGGATGCTCAA
GTTCCTGAAGAAAGTGAAGACACTCAACCCCTCACATGCTGGGCCCATTGTGGTTCACTGTAGCGCGGGC
GTGGGTCGGACTGGCACCTTCATTGTGATCGATGCCATGATGGACATGATACACTCGGAGCAGAAGGTTG
ACGTCTTTGAGTTTGTGTCTAGAATCCGCAATCAGCGCCCTCAGATGGTCCAGACGGATGTTCAGTATAC
ATTCATCTACCAAGCCTTACTGGAATACTACCTCTATGGGGACACAGAGCTGGATGTGTCCTCCCTGGAG
AGGCACCTGCAGACGCTCCATAGCACAGCCACCCATTTTGACAAGATCGGGCTGGAGGAAGAGTTCAGGA
AGCTGACCAACGTGCGAATCATGAAGGAGAACATGAGGACGGGCAACCTGCCTGCCAACATGAAGAAGGC
CCGCGTCATCCAGATCATTCCATATGACTTCAATCGGGTCATCCTGTCCATGAAAAGAGGGCAAGAGTTC
ACAGACTATATCAACGCATCCTTCATAGATGGCTACAGGCAGAAGGACTACTTCATGGCCACACAGGGGC
CTCTGGCTCACACAGTTGAGGACTTCTGGAGGATGGTATGGGAGTGGAAGTCTCACACAATCGTCATGCT
GACGGAGGTGCAGGAGCGGGAACAGGATAAATGCTACCAGTATTGGCCAACGGAGGGCTCGGTGACTCAT
GGAGATATAACTATAGAGATAAAGAGCGACACCCTGTCTGAAGCAATCAGCGTACGAGACTTTCTGGTTA
CCTTCAAACAGCCCCTGGCCCGCCAGGAAGAGCAGGTCCGCATGGTGAGACAATTCCATTTCCATGGCTG
GCCTGAGGTTGGCATCCCCGCTGAAGGCAAAGGCATGATTGACCTGATTGCAGCAGTGCAGAAGCAGCAG
CAGCAGACGGGCAACCACCCCATCACCGTGCACTGCAGCGCGGGAGCAGGGCGGACAGGTACATTCATAG
CACTCAGTAACATTTTGGAACGAGTGAAAGCCGAGGGACTCCTAGACGTGTTTCAAGCTGTGAAGAGCTT
AAGACTTCAGAGACCACACATGGTGCAGACCCTGGAGCAATATGAATTCTGCTACAAAGTGGTACAAGAT
TTTATCGATATATTTTCTGATTATGCTAATTTCAAATGA

Translation (642 aa):
MSSRKNFSRLTWFRKQRKAVVSSNDKKMPNGILEEQEQQRVMLLSRSPSGPKKFFPIPVEHLEEEIRVRS
ADDCKRFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDHCRVILSQVDGIPCSDYINASYIDGY
KEKNKFIAAQGPKQETVNDFWRMVWEQRSATIVMLTNLKERKEEKCYQYWPDQGCWTYGNIRVCVEDCVV
LVDYTIRKFCIHPQLPDSCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPSHAGPIVVHCSAG
VGRTGTFIVIDAMMDMIHSEQKVDVFEFVSRIRNQRPQMVQTDVQYTFIYQALLEYYLYGDTELDVSSLE
RHLQTLHSTATHFDKIGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEF
TDYINASFIDGYRQKDYFMATQGPLAHTVEDFWRMVWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTH
GDITIEIKSDTLSEAISVRDFLVTFKQPLARQEEQVRMVRQFHFHGWPEVGIPAEGKGMIDLIAAVQKQQ
QQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQD
FIDIFSDYANFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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