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Report for CCDS85488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85488.1 Public Mus musculus 8 Camsap3 23 108 98 CCDS HistoryNCBI Gene:69697Re-query CCDS DB by CCDS ID:85488.1Re-query CCDS DB by GeneID:69697See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000207432.1 ENSMUSP00000146896.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207432.1Link to Ensembl Protein Viewer:ENSMUSP00000146896.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207432Re-query CCDS DB by Protein ID:ENSMUSP00000146896
Original member Current member NCBI NM_001347111.1 NP_001334040.1 Accepted alive Link to Nucleotide Sequence:NM_001347111.1Link to Protein Sequence:NP_001334040.1Re-query CCDS DB by Nucleotide ID:NM_001347111Re-query CCDS DB by Protein ID:NP_001334040Link to BLAST:NP_001334040.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334040.1 1279 Q80VC9-5 1279 100% 0 0

Chromosomal Locations for CCDS 85488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3587812 3587959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3597842 3598095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3598686 3598808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3598893 3598988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3599217 3599249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3600358 3600405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3600676 3600814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3601966 3602105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3602186 3602279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3602371 3602425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3602554 3602627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3603432 3603501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3603606 3605076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3606267 3606406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3606504 3606820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3607791 3607890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3608189 3608301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3608394 3608512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3608598 3608903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3840 nt):
ATGGTGGAAGCGGCGCCCGCAGGGTCCGGGCCACTGCGGAGGACTTTCCTGGTCCCCGAGATCAAGTCTT
TGGACCAGTACGATTTCTCTCGAGCCAAGGCGGCGGCGAGTCTGGCGTGGGTGCTGCGGGCCGCATTCGG
GGGAGCAGAGCATGTGCCTCCGGAGCTGTGGGAACCCTTCTACACCGATCAGTACGCACAGGAGCACGTG
AAGCCCCCAGTGACGCGGCTGCTGCTCTCTGCGGAACTATACTGTCGGGCCTGGCGCCAGGCACTGCCAC
AGCTCGAGCCATCCCCCAGTCCCTCTGCTCTGTTGGCCTTGCTGGCGAGGAGGGGCACGGTGCCTTCACT
GCCTGAGCACCCAGTGCGCGAGGCTGACCTGAAACACCAGCCAATTCTCATGGGAGCCCACCTAGCTGTC
ATCGATGCTCTCATGGTTGCCTTCTCATTTGAGTGGACAAAGACACTACCTGGTCCCTTGGCTCTGAGCA
GCTTGGAGCACAAACTCCTTTTCTGGGTAGACACAACTGTTCGGCGGCTGCAGGAGAAGACAGAACAAGA
AGCAGCCCAGCGTGCATCTCCTGCAGCCCCTCTGGATGGGGCCTCTCCTGCCCAGCCCTCGTGCCCCACA
CGCTGGTACTGGAAGCTGGTTCCTCACGCAATTGCCTTCTGTTTGAAGGAGTCGGGGAACAAACCCCCTA
TGATTCGATATCGCAAGGACCGTGCCATTGCCCGAAGGGCTCCCTGCTTTCCAAATGTGACTACCCTTCA
GGACCTGGCCAGTGGGGCAGCACTGGCTGCCACCATCCACTGCTATTGTCCCCAGCTATTACGACTTGAG
GAGGTGTGCCTCAAGGACCCCATGTCTGTGGCAGACAGTCTATACAACCTCCAGCTGGTGCAAGACTTCT
GTGCCTCCCATCTTCCTCGAGGCTGCCCCCTGTCCCTTGAAGACTTGCTGTATGTCCCACCACCCCTCAA
GGTCAACCTGGTGGTGCTGTTGGCTGAGATGTATATGTGCTTTGAGGTTCTGAAGCCTGATTTTGTGCAG
GCCAAAGACTTGCCTGATGGACATGCTGTCTCCCCCCGGAATACAGAGACTGTTCCATCTCAGAACAACA
GTGGCAGCAGTTCTCCTGTCTTCAACTTCCGTCACCCACTTCTGTCACCTGGTGGTCCCCAGTCTCCACT
CCGAGGATCCACAGGCTCCCTGAAGTCCTCTCCATCAATGTCTCACATGGAGGCTCTTGGCAAAGCCTGG
AACCGTCAGCTTAGCCGTCCCCTCTCCCAGGCTGTGTCGTTCAGCACTCCCTTTGGCCTGGACAGCGATG
TGGATGTCGTCATGGGAGATCCTGTCCTGCTCCGCTCCGTCAGCTCAGACAGTCTGGGTCCTCCACGTCC
TGTGTCAACATCATCCCGGAATTCTGCTCAGCCAGCCCCAGAATCTGGAGACCTACCCACGATTGAAGAG
GCCCTGCAGATCATTCACAGTGCTGAGCCCCGACTGCTCCCTGATGGGGCTGCTGATGGCAGTTTCTACC
TCCATTCTCCTGAGGGTCTCTCCAAACCACCACTCTCCCCCTACCCTCCCGAAGGAGCCTCAAAGCCGCT
GTCTGATAGGCTCAACAAGGCGCCTATCTATATATCACACCCTGAGAACCCTTCAAAATCATCTCCCTGC
TCAACAGGAGAGATACTGAAACCACCACCCCCATCCGAGGGTTCCCCCAAAGCTGTGGCTTCATCCCCAG
CAGCCAACAACTCCGAAGTGAAGATGACCAGTTTTGCTGAACGCAAGAAACAGCTGGTGAAGGCTGAGGC
TGAGTCAGGATTGGGGTCTCCAACATCCACCCCCGTAGCACCTGAGGCCTTGAGCTCAGAGATGAGTGAG
CTGGGAGCCAGGCTGGAGGAGAAGCGCCGAGCCATAGAGGCACAGAAACGACGCATTGAGGCAATCTTTG
CCAAGCATAGGCAGAGGCTGGGCAAGAGCGCTTTCCTGCAGGTGCAGCCTCGGGAGGCTGCAGGGGAGGC
CGAGGAGGAAGCTGAGCTGGGCTCAGTTCCTGGTGGGGAACGGCCAGCAGGTGAGGGCCAGGGTGAGCCG
TCCTTACGGCACAAGTCAGTTACCTTCTCTCCAGACCTGGGCCCAGTGCCCCCAGAGGGACTTGGGGATT
ACAATAGAGCAGTCAGTAAGCTGAGTGCCGCTCTGAGCTCTCTGCAGCGGGACATGCAGAGGCTCACAGA
CCAGCAACAGCGGCTTCTAGCCCCTCCAGAAGCTCCTGGACCTGCCCCACCACCTGCAGCCTGGGTCATT
CCTGGACCCGCCACTGGGCCTAAAGCAGCATCCCCCAGCCCTGCCCGTCGTGCCCCAGCTGCCCGACGCA
GCCCTGGGCCAGGCCCCAGCCCAACACCCCGTAGTCCAAAACATGCAAGGCCGGCAGAGCTGAAGCTTGC
ACCTTTGACAAGGGTACTCACACCACCCCATGATGTAGACAGCCTCCCTCACCTACGCAAGTTTTCACCC
AGCCAGGTGCCTGTACAGACTCGCTCCTCTATCCTCCTGTCGGAGGGGACACCTCCCGAGGAGCCCACCA
CCAAGCCTGCCCTCATTGAGATCCCTCTAGCCAGCCTGGGGGAGCCTGCTGCTGATGAGGAAGGAGATGG
GAGCCCCCCTGGGGCTGAGGATTCCTTAGAGGAAGAGGCATCTTCTGAGGGAGAGCCCCGATCAGGGCTT
GGATTCTTTTATAAGGACGAAGACAAGCCTGAGGATGAGATGGCTCAGAAGCGAGCTAGCCTGCTGGAGC
GTCAGCAGAGGCGGGTAGAGGAAGCCCGGCGGCGCAAACAGTGGCAGGAGGCAGAGAAGGAGCAGAAACG
GGAGGAGGCCGCCAGGCTGGCTCAGGAGGCTCCAGGCTTGGCCTTTACAACTCCTGTTGTAGCCTCTGCG
GCTCCAGTGGCCACCTTGGCTCCTACTACCAGAGCCATGGCCCCAGCTGAGGAGGAGGTGGGCCCCCGGC
GGGGGGACTTCACAAGACTTGAGTATGAACGCCGGGCACAACTGAAACTGATGGATGACCTTGATAAGGT
GCTACGGCCCCGGGCCTCAGGGACCGGGGGACCAGGGCGGGGCGGGCGCAGGGCCACCCGGCCACGCTCT
GGTTGCTGTGATGACTCGGCCTTGGCACGAAGCCCAGCCCGCGGCCTGCTGGGTTCACGGCTCAGCAAGG
TCTATTCCCAGTCCACGCTGTCCCTATCTACGGTGGCCAACGAGGCTCCCAATAACCTTGGTGTGAAGAG
GCCCACCTCTCGGGCCCCTTCTCCATCAGGCCTCATGTCTCCAAGCCGCCTGCCTGGCAGTCGAGAACGT
GACTGGGAGAATGGAAGCAATGCATCCTCCCCAGCATCAGTGCCTGAGTACACAGGTCCCCGGCTATACA
AGGAACCCAGCGCCAAGTCTAACAAGTTTATCATCCACAATGCCTTGTCACACTGCTGCCTGGCAGGCAA
GGTGAATGAGCCCCAGAAGAACAGAATTCTAGAGGAAATCGAGAAAAGCAAGGCCAACCACTTCCTGATT
CTCTTTCGGGACTCAAGCTGCCAGTTCCGGGCCCTCTACACTCTGTCTGGGGAGACAGAGGAGCTATCGA
GGCTGGCAGGCTATGGGCCTCGGACCGTCACTCCTGCCATGGTCGAAGGCATCTATAAGTACAACTCGGA
TCGCAAACGGTTCACCCAGATCCCTGCTAAAACCATGTCTATGAGTGTAGACGCCTTCACTATCCAGGGA
CACCTTTGGCAAAGCAAGAAGCCCACCACGCCCAAGAAGGGTGGCGGTACCCCCAAATAG

Translation (1279 aa):
MVEAAPAGSGPLRRTFLVPEIKSLDQYDFSRAKAAASLAWVLRAAFGGAEHVPPELWEPFYTDQYAQEHV
KPPVTRLLLSAELYCRAWRQALPQLEPSPSPSALLALLARRGTVPSLPEHPVREADLKHQPILMGAHLAV
IDALMVAFSFEWTKTLPGPLALSSLEHKLLFWVDTTVRRLQEKTEQEAAQRASPAAPLDGASPAQPSCPT
RWYWKLVPHAIAFCLKESGNKPPMIRYRKDRAIARRAPCFPNVTTLQDLASGAALAATIHCYCPQLLRLE
EVCLKDPMSVADSLYNLQLVQDFCASHLPRGCPLSLEDLLYVPPPLKVNLVVLLAEMYMCFEVLKPDFVQ
AKDLPDGHAVSPRNTETVPSQNNSGSSSPVFNFRHPLLSPGGPQSPLRGSTGSLKSSPSMSHMEALGKAW
NRQLSRPLSQAVSFSTPFGLDSDVDVVMGDPVLLRSVSSDSLGPPRPVSTSSRNSAQPAPESGDLPTIEE
ALQIIHSAEPRLLPDGAADGSFYLHSPEGLSKPPLSPYPPEGASKPLSDRLNKAPIYISHPENPSKSSPC
STGEILKPPPPSEGSPKAVASSPAANNSEVKMTSFAERKKQLVKAEAESGLGSPTSTPVAPEALSSEMSE
LGARLEEKRRAIEAQKRRIEAIFAKHRQRLGKSAFLQVQPREAAGEAEEEAELGSVPGGERPAGEGQGEP
SLRHKSVTFSPDLGPVPPEGLGDYNRAVSKLSAALSSLQRDMQRLTDQQQRLLAPPEAPGPAPPPAAWVI
PGPATGPKAASPSPARRAPAARRSPGPGPSPTPRSPKHARPAELKLAPLTRVLTPPHDVDSLPHLRKFSP
SQVPVQTRSSILLSEGTPPEEPTTKPALIEIPLASLGEPAADEEGDGSPPGAEDSLEEEASSEGEPRSGL
GFFYKDEDKPEDEMAQKRASLLERQQRRVEEARRRKQWQEAEKEQKREEAARLAQEAPGLAFTTPVVASA
APVATLAPTTRAMAPAEEEVGPRRGDFTRLEYERRAQLKLMDDLDKVLRPRASGTGGPGRGGRRATRPRS
GCCDDSALARSPARGLLGSRLSKVYSQSTLSLSTVANEAPNNLGVKRPTSRAPSPSGLMSPSRLPGSRER
DWENGSNASSPASVPEYTGPRLYKEPSAKSNKFIIHNALSHCCLAGKVNEPQKNRILEEIEKSKANHFLI
LFRDSSCQFRALYTLSGETEELSRLAGYGPRTVTPAMVEGIYKYNSDRKRFTQIPAKTMSMSVDAFTIQG
HLWQSKKPTTPKKGGGTPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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