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Report for CCDS85494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85494.1 Public Mus musculus 8 Fcer2a 23 108 98 CCDS HistoryNCBI Gene:14128Re-query CCDS DB by CCDS ID:85494.1Re-query CCDS DB by GeneID:14128See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208492.1 ENSMUSP00000146568.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208492.1Link to Ensembl Protein Viewer:ENSMUSP00000146568.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208492Re-query CCDS DB by Protein ID:ENSMUSP00000146568
Original member Current member NCBI NM_001253737.1 NP_001240666.1 Accepted alive Link to Nucleotide Sequence:NM_001253737.1Link to Protein Sequence:NP_001240666.1Re-query CCDS DB by Nucleotide ID:NM_001253737Re-query CCDS DB by Protein ID:NP_001240666Link to BLAST:NP_001240666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240666.1 330 P20693-2 330 100% 0 0

Chromosomal Locations for CCDS 85494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3682810 3683008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3683338 3683444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3683566 3683717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3687920 3688009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3688117 3688179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3688287 3688349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3688534 3688596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3688798 3688860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3689777 3689830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3690022 3690141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3690809 3690827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGAATTCTCAAAACCAGGGATACTGGGAACCTCCTAGAAAGCGTTGCTGCTGTGCAAGACGTGGGACAC
AGCTCATGTTGGTGGGGCTGCTGAGCACAGCAATGTGGGCTGGCCTGCTGGCCCTGCTTCTTCTGTGGCA
CTGGGAAACGGAGAAGAATCTAAAACAGCTGGGAGACACTGCAATTCAGAATGTCTCTCATGTTACCAAG
GACTTACAAAAATTCCAGAGTAATCAATTGGCCCAGAAGTCCCAGGTTGTTCAGATGTCACAAAACTTGC
AAGAACTCCAAGCTGAACAGAAGCAAATGAAAGCTCAGGACTCTCGGCTCTCCCAGAACCTGACCGGACT
CCAGGAGGATCTAAGGAACGCCCAATCCCAGAACTCAAAACTCTCCCAGAACCTGAACAGACTCCAAGAC
GATCTAGTCAACATCAAATCCCTGGGCTTGAATGAGAAGCGCACAGCCTCCGATTCTCTAGAGAAACTCC
AGGAAGAGGTGGCAAAGCTGTGGATAGAGATACTGATTTCAAAGGGAACTGCATGCAACATATGTCCCAA
GAACTGGCTCCATTTCCAACAGAAGTGCTACTATTTTGGCAAGGGCTCCAAGCAGTGGATCCAGGCCAGG
TTCGCCTGCAGTGACCTGCAAGGGCGACTAGTCAGCATCCACAGCCAAAAGGAACAGGACTTCCTGATGC
AACACATCAACAAGAAGGATTCCTGGATTGGCCTCCAGGATCTCAATATGGAGGGAGAGTTTGTATGGTC
GGACGGGAGCCCTGTGGGTTATAGCAACTGGAATCCAGGGGAGCCCAATAACGGGGGCCAGGGTGAGGAC
TGTGTGATGATGCGGGGATCCGGCCAGTGGAACGACGCCTTCTGCCGCAGCTACTTGGATGCATGGGTGT
GTGAGCAGCTGGCAACATGTGAGATATCTGCCCCCTTAGCCTCTGTGACTCCAACAAGGCCCACCCCAAA
AAGTGAACCCTGA

Translation (330 aa):
MNSQNQGYWEPPRKRCCCARRGTQLMLVGLLSTAMWAGLLALLLLWHWETEKNLKQLGDTAIQNVSHVTK
DLQKFQSNQLAQKSQVVQMSQNLQELQAEQKQMKAQDSRLSQNLTGLQEDLRNAQSQNSKLSQNLNRLQD
DLVNIKSLGLNEKRTASDSLEKLQEEVAKLWIEILISKGTACNICPKNWLHFQQKCYYFGKGSKQWIQAR
FACSDLQGRLVSIHSQKEQDFLMQHINKKDSWIGLQDLNMEGEFVWSDGSPVGYSNWNPGEPNNGGQGED
CVMMRGSGQWNDAFCRSYLDAWVCEQLATCEISAPLASVTPTRPTPKSEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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