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Report for CCDS87916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87916.1 Public Mus musculus 1 Ildr2 23 108 98 CCDS HistoryNCBI Gene:100039795Re-query CCDS DB by CCDS ID:87916.1Re-query CCDS DB by GeneID:100039795See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87916.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192732.5 ENSMUSP00000141502.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192732.5Link to Ensembl Protein Viewer:ENSMUSP00000141502.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192732Re-query CCDS DB by Protein ID:ENSMUSP00000141502
Original member Current member NCBI NM_001357429.1 NP_001344358.1 Accepted alive Link to Nucleotide Sequence:NM_001357429.1Link to Protein Sequence:NP_001344358.1Re-query CCDS DB by Nucleotide ID:NM_001357429Re-query CCDS DB by Protein ID:NP_001344358Link to BLAST:NP_001344358.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344358.1 534 B5TVM2-3 534 100% 0 0

Chromosomal Locations for CCDS 87916.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 166254376 166254466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166269305 166269637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166270499 166270618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166303502 166303615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166307720 166307933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166308847 166309543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 166310760 166310795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGCCCGCTTTTCCCACTCTGGATCTGGATGGGAAGTTGGGGAAGATGGATAGGGTCGTGTTGGGGTGGA
CCGCTGTCTTCTGGTTAACAGCCATGGTTGAAGGCCTTCAGGTCACAGTGCCTGACAAGAAGAAGGTGGC
CATGCTCTTCCAGCCCACTGTGCTTCGATGCCACTTTTCCACGTCCTCCCATCAGCCTGCGGTGGTTCAG
TGGAAGTTCAAATCCTACTGCCAGGATCGCATGGGAGAATCCTTGGGCATGTCTTCTCCCCGAGCCCAAG
CGCTCAGCAAGAGGAACCTGGAATGGGACCCCTACTTGGATTGTTTAGACAGCAGAAGGACCGTCCGAGT
GGTAGCTTCCAAACAGGGCTCGACGGTTACCCTGGGAGATTTCTACAGGGGCAGAGAGATCACAATAGTT
CACGATGCAGATCTTCAAATTGGAAAGCTCATGTGGGGAGACAGCGGACTCTACTACTGTATCATCACCA
CCCCGGATGACCTGGAAGGCAAAAACGAAGACTCAGTGGAACTGCTGGTGTTGGTTCGCAAAGGTTACCG
GATCCAGGCTGACAAAGAGAGAGACTCCATGAAGGTCCTGTACTATGTCGAGAAGGAGCTGGCTCAGTTT
GATCCAGCCAGGAGGATGAGAGGCAGATATAACAACACCATCTCGGAACTCAGCTCCCTGCATGATGATG
ACAGCAATTTCCGCCAGTCTTACCACCAGATGCGGAATAAGCAGTTCCCTATGTCTGGAGACCTGGAAAG
CAATCCTGACTACTGGTCAGGTGTCATGGGAGGCAACAGTGGGACCAACAGGGGGCCAGCCTTGGAGTAT
AACAAAGAGGACCGTGAGAGCTTCAGGCACAGCCAGCAGCGCTCCAAATCTGAGATGCTGTCGCGGAAGA
ACTTTGCCACGGGCGTGCCGGCCGTGTCGATGGACGAGCTGGCAGCCTTCGCAGACTCGTACGGCCAGCG
GTCGCGGCGCGCCAATGGCAACAGCCACGAGGCGCGGGCGGGGAGCCGCTTCGAGCGCTCGGAGTCGCGG
GCCCACGGTGCCTTCTACCAGGACGGCTCGCTGGATGAGTACTACGGGCGCGGACGCAGTCGCGAGCCGC
CGGGAGACGGGGAGCGTGGCTGGACCTACAGCCCCGCACCCGCACGCCGCCGGCCGCCAGAGGATGCGCC
TCTGCCGCGCCTGGTGAGCCGGACCCCGGGCACCGCGCCCAAGTACGATCACTCGTACCTGAGCAGCGTG
CTGGAGCGCCAGGCGCGGCCGGAGAGCAGCAGCCGCGGGGGCAGCCTGGAGACGCCGTCCAAGCTGGGCG
CGCAGCTGGGCCCGCGCAGCGCATCCTACTACGCCTGGTCGCCGCCAACCACATACAAAGCTGGGGCCAG
CGAGGGCGAAGACGAGGACGACGCGGCGGATGAGGACGCGCTGCCACCCTACAGCGAGCTGGAGCTGAGC
CGCGGAGAGCTGAGCCGGGGCCCGTCCTACCGTGGGCGTGACCTGTCCTTCCACAGCAACTCGGAGAAGA
GGAGGAAAAAGGAGCCCGCCAAGAAACCCGGCGACTTTCCAACCAGGATGTCCCTTGTAGTCTGA

Translation (534 aa):
MPAFPTLDLDGKLGKMDRVVLGWTAVFWLTAMVEGLQVTVPDKKKVAMLFQPTVLRCHFSTSSHQPAVVQ
WKFKSYCQDRMGESLGMSSPRAQALSKRNLEWDPYLDCLDSRRTVRVVASKQGSTVTLGDFYRGREITIV
HDADLQIGKLMWGDSGLYYCIITTPDDLEGKNEDSVELLVLVRKGYRIQADKERDSMKVLYYVEKELAQF
DPARRMRGRYNNTISELSSLHDDDSNFRQSYHQMRNKQFPMSGDLESNPDYWSGVMGGNSGTNRGPALEY
NKEDRESFRHSQQRSKSEMLSRKNFATGVPAVSMDELAAFADSYGQRSRRANGNSHEARAGSRFERSESR
AHGAFYQDGSLDEYYGRGRSREPPGDGERGWTYSPAPARRRPPEDAPLPRLVSRTPGTAPKYDHSYLSSV
LERQARPESSSRGGSLETPSKLGAQLGPRSASYYAWSPPTTYKAGASEGEDEDDAADEDALPPYSELELS
RGELSRGPSYRGRDLSFHSNSEKRRKKEPAKKPGDFPTRMSLVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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