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Report for CCDS88023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88023.1 Public Mus musculus 10 Gstt3 23 108 98 CCDS HistoryNCBI Gene:103140Re-query CCDS DB by CCDS ID:88023.1Re-query CCDS DB by GeneID:103140See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173537.1 ENSMUSP00000133498.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173537.1Link to Ensembl Protein Viewer:ENSMUSP00000133498.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173537Re-query CCDS DB by Protein ID:ENSMUSP00000133498
Original member Current member NCBI NM_001346523.1 NP_001333452.1 Accepted alive Link to Nucleotide Sequence:NM_001346523.1Link to Protein Sequence:NP_001333452.1Re-query CCDS DB by Nucleotide ID:NM_001346523Re-query CCDS DB by Protein ID:NP_001333452Link to BLAST:NP_001333452.1

Chromosomal Locations for CCDS 88023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75774944 75775010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75775490 75775497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75775871 75776047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75776744 75776894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75778101 75778188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75780847 75780958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGGTCTGGAGCTCTACCTGGACCTGATGTCCCAACCCTGCCGTGCTGTCTACATCTTCGCCAAGAAGA
ACGGCATCCCCTTCCAGCTGCGTACCATAGAGCTGCTTAAAGGTCAGCAGTACACAGATTCCTTCGCCCA
GGTGAACCCTTTGAGGAAGGTGCCAGCTTTGAAGGATGGGGACTTCGTCTTGGCAGAGAGTGTGGCCATC
TTGTTGTATCTGAGTAGAAAGTACAAGGCCCCCGACCACTGGTACCCTCAGGATCTGCAGACTCGAGCTC
GTGTAGACGAGTACCTGGCATGGCAGCACACAGCCCTGCGGAGTTGTTGCACCAGGGCCATGTGGCAGAA
GATGATGTTCCCTGTGTTCCTGGGACAGCCCGTACCTCCTGAGATGCTGGCATCCACCTTGGCTGAACTG
GATGGGTGCCTGCAGGTGCTAGAGGACAAGTTCCTGCGGAACCAGGCCTTCCTTACAGGATCCCATATTT
CTGTGGCTGACTTGGTGGCCATCACAGAGCTGATGCATGACAATGGCCTGTCAGTGCTGGCTGCAAAATC
TTTGAGAGCCGACCCAAACTGGCTGCCTGGCGTCAGAGAGTAG

Translation (200 aa):
MGLELYLDLMSQPCRAVYIFAKKNGIPFQLRTIELLKGQQYTDSFAQVNPLRKVPALKDGDFVLAESVAI
LLYLSRKYKAPDHWYPQDLQTRARVDEYLAWQHTALRSCCTRAMWQKMMFPVFLGQPVPPEMLASTLAEL
DGCLQVLEDKFLRNQAFLTGSHISVADLVAITELMHDNGLSVLAAKSLRADPNWLPGVRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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