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Report for CCDS88089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88089.1 Public Mus musculus 10 Cnot2 23 108 98 CCDS HistoryNCBI Gene:72068Re-query CCDS DB by CCDS ID:88089.1Re-query CCDS DB by GeneID:72068See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105265.7 ENSMUSP00000100900.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105265.7Link to Ensembl Protein Viewer:ENSMUSP00000100900.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105265Re-query CCDS DB by Protein ID:ENSMUSP00000100900
Original member Current member NCBI NM_001359563.1 NP_001346492.1 Accepted alive Link to Nucleotide Sequence:NM_001359563.1Link to Protein Sequence:NP_001346492.1Re-query CCDS DB by Nucleotide ID:NM_001359563Re-query CCDS DB by Protein ID:NP_001346492Link to BLAST:NP_001346492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346492.1 455 Q8C5L3-3 455 100% 0 0

Chromosomal Locations for CCDS 88089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116486200 116486286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116492292 116492436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116493693 116493793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116494823 116494872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116494960 116495021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116498086 116498242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116498338 116498458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116499342 116499466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116501192 116501317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116504035 116504114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116506229 116506411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116507041 116507171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGAGGGGGATGAGCAACAATACCCCTCAGTTAAATCGCAGCTTATCACAAGGCACTCAGTTACCGAGCC
ACGTCACGCCAACAACAGGGGTACCAACAATGTCACTTCACACGCCTCCATCTCCAAGCAGGGGTATTTT
GCCTATGAATCCTAGGAATATGATGAACCACTCCCAGGTTGGTCAGGGCATTGGAATTCCTAGCAGGACA
AATAGCATGAGCAGTTCAGGGTTAGGTAGCCCCAACAGAAGCTCGCCAAGCATAATATGTATGCCAAAGC
AACAGCCTTCTCGACAGCCTTTTACTGTGAACAGTATGTCTGGATTTGGAATGAACAGGAATCAGGCATT
TGGAATGAATAACTCCTTATCAAGTAACATTTTTAATGGAACAGATGGCAGTGAAAATGTGACAGGATTG
GACCTTTCAGATTTCCCAGCGTTAGCTGACCGGAATAGAAGGGAAGGGAGCGGCAACCCAACTCCATTAA
TAAACCCCTTGGCTGGAAGAGCTCCTTACGTTGGAATGGTAACAAAACCTGCAAATGAGCAATCCCAAGA
CTTCTCAATACACAACGAAGATTTTCCAGCATTACCTGGTTCCAGCTATAAAGATCCAACGTCAAGTAAT
GACGACAGCAAATCTAATTTGAGTACATCGGGGAAGACGACTTCAAGTACAGATGGACCCAAATTCCCTG
GAGATAAAAGTTCAACAACACAAAACAATAATCAACAGAAAAAGGGGATCCAGGTGTTACCTGATGGTCG
AGTTACTAACATTCCTCAAGGGATGGTGACGGACCAATTTGGAATGATTGGCCTGTTAACATTTATCAGG
GCAGCAGAGACAGACCCAGGAATGGTACATCTTGCTTTAGGAAGTGACTTAACAACATTAGGCCTCAATC
TGAACTCACCTGAAAATCTCTATCCCAAATTTGCATCACCCTGGGCTTCTTCACCTTGTCGGCCTCAAGA
CATAGACTTCCATGTTCCATCAGAATATTTAACAAACATTCACATTAGGGATAAGCTGGCTGCAATCAAA
CTTGGCCGATATGGAGAAGACCTCCTCTTCTATCTGTATTACATGAACGGCGGGGATGTATTACAACTCT
TAGCTGCGGTAGAACTTTTTAACCGTGATTGGAGATACCACAAGGAGGAGCGGGTATGGATTACCAGGGC
ACCAGGCATGGAGCCAACAATGAAAACCAACACGTATGAGCGGGGGACCTACTATTTCTTTGACTGTCTC
AACTGGAGGAAAGTAGCTAAGGAGTTCCATCTGGAATATGACAAATTAGAAGAGCGGCCTCACCTGCCAT
CCACCTTCAACTACAACCCTGCTCAGCAAGCCTTCTAA

Translation (455 aa):
MRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRT
NSMSSSGLGSPNRSSPSIICMPKQQPSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGL
DLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSN
DDSKSNLSTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIR
AAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIK
LGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCL
NWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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