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Report for CCDS88092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88092.1 Public Mus musculus 10 Irak3 23 108 98 CCDS HistoryNCBI Gene:73914Re-query CCDS DB by CCDS ID:88092.1Re-query CCDS DB by GeneID:73914See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145665.7 ENSMUSP00000118038.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145665.7Link to Ensembl Protein Viewer:ENSMUSP00000118038.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145665Re-query CCDS DB by Protein ID:ENSMUSP00000118038
Original member Current member NCBI NM_001359184.1 NP_001346113.1 Accepted alive Link to Nucleotide Sequence:NM_001359184.1Link to Protein Sequence:NP_001346113.1Re-query CCDS DB by Nucleotide ID:NM_001359184Re-query CCDS DB by Protein ID:NP_001346113Link to BLAST:NP_001346113.1

Chromosomal Locations for CCDS 88092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 120142715 120143191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120145646 120145810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120145898 120145960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120146431 120146629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120165093 120165211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120166405 120166519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120170318 120170382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120176231 120176382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120178068 120178122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120178696 120178799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120182526 120182565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGGGCATCAACGAGCTATCCACTTAATCATCAACTATGGAGTAAGCTGGACTCCTTCAGTGCAGACGC
ATCACGAGCTTCCATTCCCCAGCTTCCCACCTGAGGTGAAGCATGCGTGCAGAGAAAACGACCCTGGACC
TCTGGAACCAGCCAATGTCACAGTGGATAATGTTCTTGTTCCTGAACATAATGAAAAAGGAACACTGCAG
AAAACCCCTATCAGCTTCCAGAGTATCCTAGAAGGAACCAAACATTTCCACAAAGACTTCCTGATTGGAG
AAGGGGAGATATTCGAAGTATACAGAGTGGACATTCGAAACCAAGCATATGCTGTTAAATTGTTTAAACA
GGAGAAAAAAATGCAACTAAAGAAGCACTGGAAGAGATTTTTATCAGAACTGGAAGTTCTACTCCTGTTC
CGTCACCCCCACATACTAGAGCTGGCTGCATATTTCACGGAGACTGAGAAACTTTGTCTGGTTTATCCCT
ATATGAGCAACGGGACGCTTTTCGACAGATTACAGTGCACAAATGGCACAACCCCGCTTTCCTGGCACGT
TCGAATCAGCGTATTGATAGGAATAGCCAAAGCCATCCAATACTTGCACAACACTCAGCCGTGCGCCGTC
ATCTGTGGCAACGTTTCCAGTGCAAACATACTCTTGGATGACCAGCTCCAACCCAAACTAACGGATTTTG
CTGCAGCGCACTTCCGACCCAATCTAGAGCAGCAGAGTTCTACCATAAATATGACCGGCGGTGGCAGGAA
ACATCTGTGGTACATGCCAGAAGAATACATCAGACAGGGAAGACTTTCCGTTAAAACTGATGTCTACAGC
TTCGGAATCGTGATCATGGAGGTTCTAACGGGCTGCAAAGTGGTGCTGGATGACCCGAAACACGTTCAGC
TGCGGGACCTCCTCATGGAACTGATGGAGAAAAGAGGCCTAGACTCCTGCCTGTCCTTCTTAGACAGGAA
GATACCACCCTGTCCTCGGAACTTCTCTGCAAAGCTCTTCTCTCTGGCGGGCCGGTGTGTGGCAACGAAG
GCCAAGTTAAGACCCACGATGGACGAAGTCCTGTCCTCTCTGGAGAGCACCCAGCCTAGCTTGTATTTTG
CAGAAGACCCTCCCACGTCCTTGAAGTCCTTCAGGTGTCCTTCTCCACTGTTCTTGGATAATGTCCCAAG
TATTCCAGTAGAAGATGATGAAAACCAGAATAACCATTCAGTACCTCCCAAGGAAGTTTTGGGGACAGAT
AGAGTGACTCAGAAAACCCCCTTTGAATGCAGCCAGTCTGAGGTCACCTTTCTAGGCTTGGACCGAAACA
GAGGGAACAGGGGAAGTGAAGCGGATTGCAACGTGCCCAGTTCTTCTCATGAGGAATGCTGGTCCCCAGA
GCTTGTGGCGCCATCCCAGGACTTAAGTCCTACTGTGATCAGTTTGGGCTCGTCTTGGGAAGTACCAGGC
CATTCTTATGGGAGCAAGCCAATGGAGAAGAGGTGTTCCTCTGGGCTCTTTTGCAGTGAGCATGAACAGT
CCAAAAAGCAGTGA

Translation (517 aa):
MGHQRAIHLIINYGVSWTPSVQTHHELPFPSFPPEVKHACRENDPGPLEPANVTVDNVLVPEHNEKGTLQ
KTPISFQSILEGTKHFHKDFLIGEGEIFEVYRVDIRNQAYAVKLFKQEKKMQLKKHWKRFLSELEVLLLF
RHPHILELAAYFTETEKLCLVYPYMSNGTLFDRLQCTNGTTPLSWHVRISVLIGIAKAIQYLHNTQPCAV
ICGNVSSANILLDDQLQPKLTDFAAAHFRPNLEQQSSTINMTGGGRKHLWYMPEEYIRQGRLSVKTDVYS
FGIVIMEVLTGCKVVLDDPKHVQLRDLLMELMEKRGLDSCLSFLDRKIPPCPRNFSAKLFSLAGRCVATK
AKLRPTMDEVLSSLESTQPSLYFAEDPPTSLKSFRCPSPLFLDNVPSIPVEDDENQNNHSVPPKEVLGTD
RVTQKTPFECSQSEVTFLGLDRNRGNRGSEADCNVPSSSHEECWSPELVAPSQDLSPTVISLGSSWEVPG
HSYGSKPMEKRCSSGLFCSEHEQSKKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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