NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8839.1 Public Homo sapiens 12 KRT79 24 110 108 CCDS HistoryNCBI Gene:338785Re-query CCDS DB by CCDS ID:8839.1Re-query CCDS DB by GeneID:338785See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8839.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330553.6 ENSP00000328358.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330553.6Link to Ensembl Protein Viewer:ENSP00000328358.5Re-query CCDS DB by Nucleotide ID:ENST00000330553Re-query CCDS DB by Protein ID:ENSP00000328358
Original member Current member NCBI NM_175834.3 NP_787028.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175834.3Link to Protein Sequence:NP_787028.1Re-query CCDS DB by Nucleotide ID:NM_175834Re-query CCDS DB by Protein ID:NP_787028Link to BLAST:NP_787028.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787028.1 535 Q5XKE5 535 100% 0 0

Chromosomal Locations for CCDS 8839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52821872 52822077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52822345 52822379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52823016 52823236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52823887 52824012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52824198 52824362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52830023 52830118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52830232 52830292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52831406 52831626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52833784 52834260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGAGGTCCTCCGTCTCTCGGCAAACATACTCCACAAAAGGGGGCTTCAGCTCCAACTCTGCCAGCGGAG
GG
AGTGGGTCCCAGGCCCGCACCAGCTTCAGCTCAGTGACGGTGTCTCGGAGCAGTGGCAGTGGTGGCGG
G
GCCCACTGTGGCCCCGGCACAGGTGGCTTTGGCAGCCGAAGCCTCTATAACTTGGGGGGCCACAAGAGT
ATC
TCTGTCAGTGTGGCCGGAGGGGCCTTGTTGGGGCGGGCTCTGGGGGGCTTTGGCTTTGGCAGCAGGG
CA
TTTATGGGACAGGGGGCTGGCAGGCAGACGTTTGGGCCTGCTTGTCCTCCTGGGGGGATCCAGGAGGT
C
ACTGTCAACCAGAGCCTGCTGACCCCCCTCCATGTGGAGATTGACCCCGAGATCCAGCGAGTGCGCACT
CAG
GAGCGGGAGCAGATCAAGACCCTCAACAACAAGTTCGCCTCCTTCATCGACAAGGTGCGGTTCCTGG
AG
CAACAGAATAAGGTGCTGGAGACCAAGTGGGCACTGCTGCAGGAGCAGGGCCAGAACTTGGGTGTCAC
C
AGGAACAACCTGGAGCCCCTCTTTGAGGCCTACCTGGGTAGCATGCGGAGCACGCTGGACAGACTTCAG
AGC
GAGCGGGGGAGGCTGGACTCAGAGCTCAGGAACGTGCAGGACCTTGTGGAGGACTTCAAGAACAAGT
AC
GAGGATGAAATCAACAAGCACACTGCTGCAGAGAACGAGTTTGTGGTGCTCAAGAAGGATGTGGATGC
A
GCATACATGGGCCGGATGGATCTGCATGGCAAAGTGGGCACCTTGACCCAGGAGATTGACTTCCTGCAG
CAA
CTCTATGAAATGGAGCTGAGCCAAGTGCAGACCCACGTGTCTAACACCAATGTGGTGCTGTCCATGG
AC
AACAACCGCAACCTGGACCTGGACAGCATCATCGCCGAGGTCAAGGCCCAGTATGAGCTGATTGCCCA
G
AGGAGCCGGGCTGAGGCCGAGGCCTGGTACCAGACCAAGTATGAGGAGCTGCAGGTGACTGCTGGGAAG
CAT
GGGGACAACCTGCGGGACACCAAGAACGAGATTGCTGAGCTCACCCGCACTATCCAGAGGCTGCAGG
GG
GAGGCTGATGCAGCCAAGAAGCAGTGTCAGCAGCTGCAGACGGCCATTGCGGAAGCGGAGCAGCGTGG
G
GAGCTGGCACTCAAGGATGCTCAGAAGAAGCTTGGGGATCTGGATGTGGCCCTGCACCAGGCCAAGGAG
GAC
CTGACACGGCTGCTGCGTGACTACCAGGAGCTGATGAATGTCAAGCTGGCCCTGGACGTGGAGATTG
CC
ACCTACCGCAAGCTTCTGGAGAGCGAGGAGAGCAGGATGTCTGGAGAATGTCCCAGTGCAGTCAGCAT
T
TCTGTGACTGGCAACTCCACCACTGTGTGCGGAGGTGGCGCAGCCAGCTTTGGAGGTGGCATCTCCCTG
GGT
GGGAGTGGGGGGGCCACCAAGGGTGGATTCAGCACAAATGTGGGCTATAGCACCGTCAAGGGAGGGC
CA
GTCTCTGCGGGCACCTCCATCCTGCGGAAGACCACTACGGTCAAGACGTCCAGCCAGAGGTATTAG


Translation (535 aa):
MRSSVSRQTYSTKGGFSSNSASGGSGSQARTSFSSVTVSRSSGSGGGAHCGPGTGGFGSRSLYNLGGHKS
I
SVSVAGGALLGRALGGFGFGSRAFMGQGAGRQTFGPACPPGGIQEVTVNQSLLTPLHVEIDPEIQRVRT
Q
EREQIKTLNNKFASFIDK
VRFLEQQNKVLETKWALLQEQGQNLGVTRNNLEPLFEAYLGSMRSTLDRLQ
S
ERGRLDSELRNVQDLVEDFKN
KYEDEINKHTAAENEFVVLKKDVDAAYMGRMDLHGKVGTLTQEIDFLQ
Q
LYEM
ELSQVQTHVSNTNVVLSMDNNRNLDLDSIIAEVKAQYELIAQRSRAEAEAWYQTKYEELQVTAGK
H
GDNLRDTKNEIAELTRTIQRLQGEADAAKKQ
CQQLQTAIAEAEQRGELALKDAQKKLGDLDVALHQAKE
D
LTRLLRDYQELMNVKLALDVEIATYRKLLESEES
RMSGECPSAVSISVTGNSTTVCGGGAASFGGGISL
G
GSGGATKGGFSTNVGYSTVKGGPVSAGTSILRKTTTVKTSSQRY




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser