NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88411.1 Public Mus musculus 12 Pacs2 23 108 98 CCDS HistoryNCBI Gene:217893Re-query CCDS DB by CCDS ID:88411.1Re-query CCDS DB by GeneID:217893See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223502.1 ENSMUSP00000152439.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223502.1Link to Ensembl Protein Viewer:ENSMUSP00000152439.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223502Re-query CCDS DB by Protein ID:ENSMUSP00000152439
Original member Current member NCBI NM_001291444.1 NP_001278373.1 Accepted alive Link to Nucleotide Sequence:NM_001291444.1Link to Protein Sequence:NP_001278373.1Re-query CCDS DB by Nucleotide ID:NM_001291444Re-query CCDS DB by Protein ID:NP_001278373Link to BLAST:NP_001278373.1

Chromosomal Locations for CCDS 88411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113014564 113014682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113044226 113044313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113045478 113045567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113047029 113047154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113049807 113049969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113050517 113050590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113050881 113050961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113052231 113052290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113056810 113056967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113059723 113059813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113060083 113060160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113060629 113060771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113061073 113061211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113061640 113061744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113061849 113061955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113062447 113062601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113063332 113063442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113063830 113063938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113068077 113068119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113068980 113069022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113069282 113069423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113070057 113070283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113070668 113070781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113071538 113071656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGGCCGAGCGGGGCCGCCTCGGCCTGCCCGGCGCGCCCGGAGCGCTCAACACTCCGGTGCCCATGAACC
TGTTTGCCACCTGGGAGGTGGACGGCTCCAGCCCCAGCTGCGTGCCCAGGTTGTGTAGCCTGACCCTGAA
GAAGCTGGCAGTGCTCCGGGAACTGGAAAAAGAACTCCTGTCCGTGGTGATTGCCGTCAAGATGCAGGGT
TCCAAGCGTGTCTTGAGATCACATGAGATTGTGTTGCCTCCTAGTGGACAAGTGGAAACTGACCTGGCTC
TGACCTTCTCTCTCCAGTACCCCCACTTCCTGAAGCGGGAAGGCAACAAGCTGCAGATCATGCTACAGCG
CAGGAAGCGGTACAAGAACAGGACGATCCTGGGCTACAAAACGCTGGCCGCGGGCTCCATCAACATGGCT
GAGGTGATGCAGCACCCCTCTGAGGGCGGCCAAGTTCTGAGCCTCTGCAGCAGCATCAAAGAGGCCTCTG
TCAAGGTGGCCGAGATCTGGATCGTCTCCCTGTCCAGCCAGCCCATCGACCATGAGGATAGTGCCATGCA
GGCTGGCCCCAAGACCAAGTCCACAGATAACTACTCTGAGGAGGAGTATGAGAGCTTTTCCTCTGAACAA
GAAGCCAGTGACGATGCTGTACAAGGGCAGGATCTTGACGAGGACGACTTTGATGTGGGAAAACCCAAGA
AGCAGCGGCGCTCGATAGTAAGAACGACGTCCATGACCAGGCAACAGAACTTCAAGCAGAAGGTGGTGGC
GCTACTGCGCAGGTTCAAGGTGTCAGAGGAGGTCTTGGATTCGGAGCAGGACCCTGCAGAACATGTTCCC
GAGGTGGAGGAGGACCTGGATCTTCTCTATGACACGCTGGATGTGGAGAACCCCAGCGACAGTGGCCCTG
ACATGGATGACGATGACAGTGTCCTTAGCACCCCCAAGCCCAAGCTCAGGCCTTACTTCGAAGGCCTGTC
TCACTCCAGCTCACAGACAGAGATAGGGAGCATCCACAGTGCCCGGAGCCACAGGGAGCCTCCAAGCCCG
GCTGATGTACCTGAGAAGACGCGATCCCTGGGAGGCAAGCAGCAGCTCAGCGACAGCGTCTCTGACACGG
TGGCCCTTAGTGCAGCAGTCCCCCGGGAACCATCAGGGCAACCTGAGGACAGCCCAGAGGCTGAGACCTC
CACCTTAGATGTGTTCACCGAGAAGCTGCCTCCCAGTGGAAGAATCATCAAGACTGAGTCACTTGTCATC
CCCTCCACCAGGTCAGAATCAAAGCCGGCCGGCCGCCGGGGCCGGAGCACATCCCTGAAGGAGCGACAGC
CTGCTCGGCCACAGAATGAACGGGCCAACAGCCTAGACAATGAGCGCTGTCCAGACACGAGGAGCCAGCT
TCAGGTTAGGATTCCCAGGAAAACTGTGTATGACCAATTGAACCACATCCTCATCTCTGATGACCAACTC
CCCGAGAATATCATTCTCGTCAACACCTCTGACTGGCAGGGACAGTTCCTCTCAGATGTCCTGCAGAAGC
ATACACTTCCTGTGGTCTGCACGTGCTCTGCTGCTGACGTGCAGGCTGCCTTCAGCACCATTGTCTCTCG
GATACAGCGATACTGCAACTGCAATTCTCAGCCACCGACCCCTGTGAAGATCGCAGTGGCGGGAGCGCAG
CATTACCTCAGCGCCATCCTGCGGCTCTTCGTGGAGCAGCTGTCTCACAAGACACCTGACTGGCTCGGCT
ACATGCGCTTCCTCATCATCCCACTGGGCTCCCACCCCGTGGCCAGGTACCTGGGCTCTGTGGACTACCG
CTACAACAACTTCTTCCAGGATCTGGCCTGGAGAGACCTGTTCAACAAGCTGGAAGCCCAGAGCAGTGTG
CAGGACACACCAGACATCGTGTCACGCATCACCCAGTACATCTCAGGAGCCAACTGTGCTCACCAGCTCC
CCATCGCAGAGGCCATGCTGACCTACAAGCAGAAGAGCCCTGATGAAGAATCCTCTCAGAGGTTCATTCC
CTTTGTCGGGGTTGTGAAGGTTGGAATCGTGGAACCATCTTCAGCCACATCAGGAGACTCTGACGACGCA
GCCCCCTCAAGCTCCAGCATACTCTCTTCTACCCCACCGTCTGCATCTACATCTCCGGCGGCCAAGGAGG
CTTCGCCTACCCCACCCTCCTCCCCTTCAGTGAGTGGAGGCCTGTCCTCCCCCAGCCAGGGCGTCGGTGC
TGAGCTCATGGGGCTGCAGGTGGACTACTGGACAGCAGCGCAGCCTGCGGACAGGAAGAGAGATGCCGAG
AAGAAGGACATGCCCACCACCAAAAACACGCTCAAGTGCACTTTCCGGTCCCTCCAGGTCAGCAGGCTGC
CCAGCAGTGGTGAGGCTGCAGCCACACCCACCATGTCCATGACTGTCGTCACCAAGGAGAAGAACAAGAA
GGTGATGTTTTTGCCCAAGAAAACAAAGGACAAGGAAGTGGAATCCAAAAGCCAGTGCATCGAGGGCATC
AGCCGGCTGATCTGCACAGCTAAGCACCAACAGAACATGCTTCGGGTCCTCATCGACGGCGTGGAATGCA
GCGATGTCAAGTTCTTCCAGCTGGCTGCCCAGTGGTCTTCTCACGTGAAGCACTTCCCCATCTGCATCTT
TGGACACTCCAAAGCCACCTTCTAG

Translation (894 aa):
MAERGRLGLPGAPGALNTPVPMNLFATWEVDGSSPSCVPRLCSLTLKKLAVLRELEKELLSVVIAVKMQG
SKRVLRSHEIVLPPSGQVETDLALTFSLQYPHFLKREGNKLQIMLQRRKRYKNRTILGYKTLAAGSINMA
EVMQHPSEGGQVLSLCSSIKEASVKVAEIWIVSLSSQPIDHEDSAMQAGPKTKSTDNYSEEEYESFSSEQ
EASDDAVQGQDLDEDDFDVGKPKKQRRSIVRTTSMTRQQNFKQKVVALLRRFKVSEEVLDSEQDPAEHVP
EVEEDLDLLYDTLDVENPSDSGPDMDDDDSVLSTPKPKLRPYFEGLSHSSSQTEIGSIHSARSHREPPSP
ADVPEKTRSLGGKQQLSDSVSDTVALSAAVPREPSGQPEDSPEAETSTLDVFTEKLPPSGRIIKTESLVI
PSTRSESKPAGRRGRSTSLKERQPARPQNERANSLDNERCPDTRSQLQVRIPRKTVYDQLNHILISDDQL
PENIILVNTSDWQGQFLSDVLQKHTLPVVCTCSAADVQAAFSTIVSRIQRYCNCNSQPPTPVKIAVAGAQ
HYLSAILRLFVEQLSHKTPDWLGYMRFLIIPLGSHPVARYLGSVDYRYNNFFQDLAWRDLFNKLEAQSSV
QDTPDIVSRITQYISGANCAHQLPIAEAMLTYKQKSPDEESSQRFIPFVGVVKVGIVEPSSATSGDSDDA
APSSSSILSSTPPSASTSPAAKEASPTPPSSPSVSGGLSSPSQGVGAELMGLQVDYWTAAQPADRKRDAE
KKDMPTTKNTLKCTFRSLQVSRLPSSGEAAATPTMSMTVVTKEKNKKVMFLPKKTKDKEVESKSQCIEGI
SRLICTAKHQQNMLRVLIDGVECSDVKFFQLAAQWSSHVKHFPICIFGHSKATF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH