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Report for CCDS88566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88566.1 Public Mus musculus 14 Fam107a 23 108 98 CCDS HistoryNCBI Gene:268709Re-query CCDS DB by CCDS ID:88566.1Re-query CCDS DB by GeneID:268709See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88566.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120411.8 ENSMUSP00000112769.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120411.8Link to Ensembl Protein Viewer:ENSMUSP00000112769.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000120411Re-query CCDS DB by Protein ID:ENSMUSP00000112769
Original member Current member NCBI NM_001360339.1 NP_001347268.1 Accepted alive Link to Nucleotide Sequence:NM_001360339.1Link to Protein Sequence:NP_001347268.1Re-query CCDS DB by Nucleotide ID:NM_001360339Re-query CCDS DB by Protein ID:NP_001347268Link to BLAST:NP_001347268.1

Chromosomal Locations for CCDS 88566.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 8298690 8298797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8299510 8299666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8301059 8301233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 8317505 8317583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCGCAGAAGCTGGGCGAGTGGGCCAGTGCGCCCGCCGAGGCCACCGGGCTGTACCGAGCCGTGCTGC
TCAGGTCAGCCTCCATGTACTCAGAGATCCAGAGGGAGCGGGCTGACATCGAGGGACTCATGGCCAGACC
AGAGTACAGAGAGTGGAACTCAGAGCTCATCAAACCCAAGAAGCTGCTGAACCCTGTGAAGGCTTCTCGG
AGCCATCAGGAGCTGCACCGTGAGCTGCTTATGAACCACAAAAGGGGCTTGGGTATGGACAGCAAGCCTG
AGCTGCAGCGAGTTCTAGAGCACCGTCGCAGGAATCAGCTGATCAAAAAGAAGGAGGAGGAGCTAGAGGC
CAAGCGGATGCAGTGCCCCTTCAAGCAGGAGCTGCTGAGGCGGCAGCAGAGACTGAACCAGCTGGAAAAC
CCACCACAGAGAGACGAGGACCACGCCCCTGAGTTCATCAAAGTCCGGGAAAACCTACGCAGAATCACCA
CACTGACCAGCGAGGAAAGAGCACTGTAG

Translation (172 aa):
MAQKLGEWASAPAEATGLYRAVLLRSASMYSEIQRERADIEGLMARPEYREWNSELIKPKKLLNPVKASR
SHQELHRELLMNHKRGLGMDSKPELQRVLEHRRRNQLIKKKEEELEAKRMQCPFKQELLRRQQRLNQLEN
PPQRDEDHAPEFIKVRENLRRITTLTSEERAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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