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Report for CCDS88570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88570.1 Public Mus musculus 14 Slc4a7 23 108 98 CCDS HistoryNCBI Gene:218756Re-query CCDS DB by CCDS ID:88570.1Re-query CCDS DB by GeneID:218756See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225175.2 ENSMUSP00000153166.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225175.2Link to Ensembl Protein Viewer:ENSMUSP00000153166.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000225175Re-query CCDS DB by Protein ID:ENSMUSP00000153166
Original member Current member NCBI NM_001360509.1 NP_001347438.1 Accepted alive Link to Nucleotide Sequence:NM_001360509.1Link to Protein Sequence:NP_001347438.1Re-query CCDS DB by Nucleotide ID:NM_001360509Re-query CCDS DB by Protein ID:NP_001347438Link to BLAST:NP_001347438.1

Chromosomal Locations for CCDS 88570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 14703233 14703280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14729202 14729283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14733722 14733868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14737369 14737507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14738184 14738344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14739725 14739874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14742414 14742782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14745968 14746083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14748466 14748623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14750435 14750522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14757285 14757431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14760235 14760341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14762348 14762522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14765577 14765710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14766740 14766985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14771209 14771314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14772536 14772697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14773237 14773350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14774891 14775052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14775177 14775428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14778826 14778894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14782049 14782222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14786292 14786423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14791067 14791164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14796077 14796158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3618 nt):
ATGGAGGCAGACGGGGCCGGCGAGCAGATGAGACCGCTACTCACGCGGGGTCCAGATGAAGAAGCTGTTG
TGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAATTAGAAAGTCATCGAGC
TGTATATGTTGGTGTTCATGTACCATTTAGTAAAGAGAGTCGTCGGCGTCACAAGCATCGAGGGCACAAA
CATCACCACCGGAGAAGAAAAGACAAAGACTCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATGACA
CGCCATCGCAGAGGGTGCAGTTCATCCTCGGGACTGAAGACGACGATGAGGAGCACATTCCCCACGACCT
CTTCACAGAGATGGATGAGCTCTGCTACAGAGACGGAGAAGAGTACGAGTGGAAGGAGACGGCCAGGTGG
CTGAAATTTGAAGAGGATGTTGAAGATGGTGGTGACCGATGGAGTAAACCCTATGTGGCAACTCTGTCTC
TACACAGTCTCTTTGAATTGAGGAGTTGTATCCTGAATGGAACAGTTATGCTGGATATGAGAGCAAGCAC
TCTTGATGAAATTGCAGATATGGTGTTAGACAACATGATAGCATCTGGCCAGTTAGATGACTCCATAAGG
GAGAACGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAAAATGAGAAAAGGTTCACGAGTCGGATTC
CCCTGGTTCGATCCTTTGCAGATATAGGGGAAGGCCTGTCAGCCTCCCGCCATTCTTTGCGAACAGGTCT
GTCTGCCTCAAACCTTTCCTTGAGAGGAGAATCGCCTTTATCCCTTCTTCTCAGCCATCTTCTTCCTTCT
TCAAGAGCTGGCACCCCTGCAGGCTCAAGGTGTACCACCCCAGTACCCACTCCCCAGAGCAGTCCTCCCT
CCAGCCCCGACTTAAGTCGTCTGGCCTCCAGAAGTTTCCAACAGACCCAGCCTCAGGCCCCAGAAGTACT
GGTGTCACCTGACAGGGATGATATTCCCAGAGTAGTAATTCATCCGCCTGAGGAAGACATAGAAGCACTC
AAAGGCCAAGAGCAGAAGAATGAGGAAAATACTGCCTTCACTCCAGGGATTTTGGCTTCTCCACAGTCTG
CTCCTGGAAACTTGGACAATAGTAAAAGTGGTGAAATGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAA
TAGTACTGTTGACTTTAGCAAGGTTGACATGAATTTCATGAGGAAAATTCCTACAGGAGCTGAGGCATCC
AATGTTTTGGTAGGAGAAGTGGACTTCTTGGAGAGACCGATCATTGCATTTGTGAGACTGGCTCCTGCAG
TTCTCCTCTCAGGGTTGACTGAGGTCCCTGTGCCCACTAGGTTTTTGTTTCTGTTACTGGGCCCAGCAGG
GAAAGCCCCACAGTACCATGAAATTGGCAGATCCATAGCAACTCTCATGACAGATGAGATTTTTCATGAT
GTGGCTTATAAAGCAAAAGATCGTAATGACCTCCTATCTGGAATTGATGAATTCTTAGATCAAGTAACTG
TTCTTCCTCCAGGAGAGTGGGATCCTTCCATACGCATAGAGCCTCCAAAAAGTGTTCCTTCTCAGGAAAA
AAGGAAGATTCCTGTGTTTCCTAATGGATCTGCTGCAATGTCTGTTGACCCTCCCAAGGAGGATGATCAC
CATGCTGGGCCTGAGCTGCAGAGGACTGGACGGCTTTTTGGTGGTTTGATACTTGACATCAAAAGGAAAG
CACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGTCTGCAGTGCCTGGCCTCGATTCTTTTCCTATA
CTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTGCTTGGAGAAGCTACAGAAGGCAGAATAAGT
GCAATAGAGTCTCTTTTTGGAGCGTCATTAACTGGGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAA
CAATACTGGGGAGCACAGGTCCAGTCCTAGTGTTTGAAAAAATTTTATTTAAATTCTGTAGAGATTATCA
CCTTTCCTATCTATCATTAAGAACCAGTATTGGTCTGTGGACATCTTTCTTGTGCATTGTATTGGTCGCA
ACAGATGCAAGCAGCCTTGTTTGTTACATTACTCGGTTCACAGAAGAAGCTTTTGCGGCTCTCATTTGTA
TCATATTCATCTATGAAGCTCTGGAGAAGCTCTTTCACTTAGGAGAAATATATGCATTTAATATGCACAA
CAACTTGGATGAATTGACCAGTTACACATGTGTATGTGCTGAGCCATCTAACCCTAGCAACGAAACTCTA
GAACTGTGGAAGAGGAAGAATATAACAGCATACAGTGTTTCCTGGGGCAACCTTACTGTTTCTGAGTGTA
AGACCTTCCATGGTATGTTTGTGGGATCAGCTTGTGGGCCTCATGGACCTTATGTTCCTGACGTGCTCTT
CTGGTGTGTCGTCTTGTTTTTCACGACGTTCTTTCTGTCTTCATTCCTCAAGCAGTTTAAGACCAAGAGA
TATTTTCCTACCAAGGTACGATCAACAATCAGTGACTTTGCTGTATTTCTCACAATAGTAATAATGGTTG
CAATTGACTACCTTGTAGGAATTCCATCTCCTAAACTTCATGTGCCTGAAAAGTTCGAGCCTACTGATCC
AAGTAGGGGCTGGATCATAAGCCCTTTGGGAGATAACCCTTGGTGGACCTTACTAATTGCAGCAGTTCCA
GCTCTCCTTTGTACTATTCTCATCTTTATGGACCAGCAGATCACAGCTGTAATCATCAACAGAAAAGAAC
ACAAACTCAAGAAAGGAGCTGGCTACCACCTTGACTTGCTCATGGTTGGTGTCATGTTGGGAGTCTGCTC
TATCATGGGCTTGCCGTGGTTTGTGGCTGCGACAGTGTTGTCTATAAGTCATGTCAACAGCTTGAAAGTG
GAGTCTGAGTGTTCTGCTCCAGGGGAGCAGCCCAAGTTTCTGGGAATTCGTGAACAGCGGGTTACAGGGC
TGATGATTTTTATCCTGATGGGCCTCTCTGTGTTCATGACTTCAGTATTAAAGTTTATCCCAATGCCAGT
TTTGTACGGTGTTTTTCTTTATATGGGAGTTTCATCGTTGAAAGGAATTCAGTTTTTTGACCGTATCAAG
TTATTTGGAATGCCTGCCAAGCACCAGCCCGACCTAATCTACCTCCGCTATGTCCCCCTGTGGAAGGTGC
ACGTGTTCACGGTCGTCCAGCTGACCTGCCTAGTCCTGCTGTGGGTGATCAAAGCCTCTGCTGCTGCAGT
AGTTTTTCCCATGATGGTTCTTGCATTAGTCTTTGTGCGCAAGCTCATGGATCTCTGTTTCACAAAGAGA
GAACTCAGTTGGCTTGATGACCTCATGCCAGAAAGTAAGAAAAAGAAAGAAGATGACAAAAAGAAAAAAG
AGAAAGAGGAAGCTGAACGGATGCTTCAGGATGATGAGGACACTGTGCACCTCCCATTCGAAAGAGGGAG
TCTCCTGCAGATTCCAGTGAAAACTCTAAAATATAGCCCTGAAAAGCCTGTGAGTGTGACAATAAATTTC
GAAGATGAACCGTCAAAAAAATACATGGATGCTGAAACTTCATTGTAA

Translation (1205 aa):
MEADGAGEQMRPLLTRGPDEEAVVDLGKTSSTVNTKFEKEELESHRAVYVGVHVPFSKESRRRHKHRGHK
HHHRRRKDKDSDKEDGRESPSYDTPSQRVQFILGTEDDDEEHIPHDLFTEMDELCYRDGEEYEWKETARW
LKFEEDVEDGGDRWSKPYVATLSLHSLFELRSCILNGTVMLDMRASTLDEIADMVLDNMIASGQLDDSIR
ENVREALLKRHHHQNEKRFTSRIPLVRSFADIGEGLSASRHSLRTGLSASNLSLRGESPLSLLLSHLLPS
SRAGTPAGSRCTTPVPTPQSSPPSSPDLSRLASRSFQQTQPQAPEVLVSPDRDDIPRVVIHPPEEDIEAL
KGQEQKNEENTAFTPGILASPQSAPGNLDNSKSGEMKGNGSGGSRENSTVDFSKVDMNFMRKIPTGAEAS
NVLVGEVDFLERPIIAFVRLAPAVLLSGLTEVPVPTRFLFLLLGPAGKAPQYHEIGRSIATLMTDEIFHD
VAYKAKDRNDLLSGIDEFLDQVTVLPPGEWDPSIRIEPPKSVPSQEKRKIPVFPNGSAAMSVDPPKEDDH
HAGPELQRTGRLFGGLILDIKRKAPFFLSDFKDALSLQCLASILFLYCACMSPVITFGGLLGEATEGRIS
AIESLFGASLTGIAYSLFAGQPLTILGSTGPVLVFEKILFKFCRDYHLSYLSLRTSIGLWTSFLCIVLVA
TDASSLVCYITRFTEEAFAALICIIFIYEALEKLFHLGEIYAFNMHNNLDELTSYTCVCAEPSNPSNETL
ELWKRKNITAYSVSWGNLTVSECKTFHGMFVGSACGPHGPYVPDVLFWCVVLFFTTFFLSSFLKQFKTKR
YFPTKVRSTISDFAVFLTIVIMVAIDYLVGIPSPKLHVPEKFEPTDPSRGWIISPLGDNPWWTLLIAAVP
ALLCTILIFMDQQITAVIINRKEHKLKKGAGYHLDLLMVGVMLGVCSIMGLPWFVAATVLSISHVNSLKV
ESECSAPGEQPKFLGIREQRVTGLMIFILMGLSVFMTSVLKFIPMPVLYGVFLYMGVSSLKGIQFFDRIK
LFGMPAKHQPDLIYLRYVPLWKVHVFTVVQLTCLVLLWVIKASAAAVVFPMMVLALVFVRKLMDLCFTKR
ELSWLDDLMPESKKKKEDDKKKKEKEEAERMLQDDEDTVHLPFERGSLLQIPVKTLKYSPEKPVSVTINF
EDEPSKKYMDAETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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