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Report for CCDS88580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88580.1 Public Mus musculus 14 Slc4a7 23 108 98 CCDS HistoryNCBI Gene:218756Re-query CCDS DB by CCDS ID:88580.1Re-query CCDS DB by GeneID:218756See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223740.2 ENSMUSP00000152933.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223740.2Link to Ensembl Protein Viewer:ENSMUSP00000152933.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000223740Re-query CCDS DB by Protein ID:ENSMUSP00000152933
Original member Current member NCBI NM_001360515.1 NP_001347444.1 Accepted alive Link to Nucleotide Sequence:NM_001360515.1Link to Protein Sequence:NP_001347444.1Re-query CCDS DB by Nucleotide ID:NM_001360515Re-query CCDS DB by Protein ID:NP_001347444Link to BLAST:NP_001347444.1

Chromosomal Locations for CCDS 88580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 14718858 14718890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14729202 14729283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14733722 14733868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14737369 14737507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14738184 14738344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14739725 14739913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14745968 14746083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14748466 14748623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14750435 14750522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14757285 14757431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14760235 14760341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14762348 14762522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14765577 14765710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14766740 14766985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14771209 14771314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14772536 14772697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14773237 14773350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14774891 14775052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14775177 14775428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14778826 14778894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14782049 14782222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14786292 14786423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14791067 14791164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14793950 14794057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14796077 14796158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3381 nt):
ATGGAAAGATTTCAGCTGGCGAGGAAGTTGCATGGTCCAGATGAAGAAGCTGTTGTGGATCTTGGCAAAA
CT
AGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAATTAGAAAGTCATCGAGCTGTATATGTTGGTGT
T
CATGTACCATTTAGTAAAGAGAGTCGTCGGCGTCACAAGCATCGAGGGCACAAACATCACCACCGGAGA
AGA
AAAGACAAAGACTCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATGACACGCCATCGCAGAGGG
TG
CAGTTCATCCTCGGGACTGAAGACGACGATGAGGAGCACATTCCCCACGACCTCTTCACAGAGATGGA
T
GAGCTCTGCTACAGAGACGGAGAAGAGTACGAGTGGAAGGAGACGGCCAGGTGGCTGAAATTTGAAGAG
GAT
GTTGAAGATGGTGGTGACCGATGGAGTAAACCCTATGTGGCAACTCTGTCTCTACACAGTCTCTTTG
AA
TTGAGGAGTTGTATCCTGAATGGAACAGTTATGCTGGATATGAGAGCAAGCACTCTTGATGAAATTGC
A
GATATGGTGTTAGACAACATGATAGCATCTGGCCAGTTAGATGACTCCATAAGGGAGAACGTCAGAGAA
GCT
CTTCTGAAGAGACATCATCATCAAAATGAGAAAAGGTTCACGAGTCGGATTCCCCTGGTTCGATCCT
TT
GCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATGGGATTTTGGCTTCTCCACA
G
TCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGTGAAATGAAAGGTAACGGAAGTGGAGGAAGCAGA
GAA
AATAGTACTGTTGACTTTAGCAAGGTTGACATGAATTTCATGAGGAAAATTCCTACAGGAGCTGAGG
CA
TCCAATGTTTTGGTAGGAGAAGTGGACTTCTTGGAGAGACCGATCATTGCATTTGTGAGACTGGCTCC
T
GCAGTTCTCCTCTCAGGGTTGACTGAGGTCCCTGTGCCCACTAGGTTTTTGTTTCTGTTACTGGGCCCA
GCA
GGGAAAGCCCCACAGTACCATGAAATTGGCAGATCCATAGCAACTCTCATGACAGATGAGATTTTTC
AT
GATGTGGCTTATAAAGCAAAAGATCGTAATGACCTCCTATCTGGAATTGATGAATTCTTAGATCAAGT
A
ACTGTTCTTCCTCCAGGAGAGTGGGATCCTTCCATACGCATAGAGCCTCCAAAAAGTGTTCCTTCTCAG
GAA
AAAAGGAAGATTCCTGTGTTTCCTAATGGATCTGCTGCAATGTCTGTTGACCCTCCCAAGGAGGATG
AT
CACCATGCTGGGCCTGAGCTGCAGAGGACTGGACGGCTTTTTGGTGGTTTGATACTTGACATCAAAAG
G
AAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGTCTGCAGTGCCTGGCCTCGATTCTTTTC
CTA
TACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTGCTTGGAGAAGCTACAGAAGGCAGAA
TA
AGTGCAATAGAGTCTCTTTTTGGAGCGTCATTAACTGGGATTGCCTATTCATTGTTTGCTGGGCAACC
T
CTAACAATACTGGGGAGCACAGGTCCAGTCCTAGTGTTTGAAAAAATTTTATTTAAATTCTGTAGAGAT
TAT
CACCTTTCCTATCTATCATTAAGAACCAGTATTGGTCTGTGGACATCTTTCTTGTGCATTGTATTGG
TC
GCAACAGATGCAAGCAGCCTTGTTTGTTACATTACTCGGTTCACAGAAGAAGCTTTTGCGGCTCTCAT
T
TGTATCATATTCATCTATGAAGCTCTGGAGAAGCTCTTTCACTTAGGAGAAATATATGCATTTAATATG
CAC
AACAACTTGGATGAATTGACCAGTTACACATGTGTATGTGCTGAGCCATCTAACCCTAGCAACGAAA
CT
CTAGAACTGTGGAAGAGGAAGAATATAACAGCATACAGTGTTTCCTGGGGCAACCTTACTGTTTCTGA
G
TGTAAGACCTTCCATGGTATGTTTGTGGGATCAGCTTGTGGGCCTCATGGACCTTATGTTCCTGACGTG
CTC
TTCTGGTGTGTCGTCTTGTTTTTCACGACGTTCTTTCTGTCTTCATTCCTCAAGCAGTTTAAGACCA
AG
AGATATTTTCCTACCAAGGTACGATCAACAATCAGTGACTTTGCTGTATTTCTCACAATAGTAATAAT
G
GTTGCAATTGACTACCTTGTAGGAATTCCATCTCCTAAACTTCATGTGCCTGAAAAGTTCGAGCCTACT
GAT
CCAAGTAGGGGCTGGATCATAAGCCCTTTGGGAGATAACCCTTGGTGGACCTTACTAATTGCAGCAG
TT
CCAGCTCTCCTTTGTACTATTCTCATCTTTATGGACCAGCAGATCACAGCTGTAATCATCAACAGAAA
A
GAACACAAACTCAAGAAAGGAGCTGGCTACCACCTTGACTTGCTCATGGTTGGTGTCATGTTGGGAGTC
TGC
TCTATCATGGGCTTGCCGTGGTTTGTGGCTGCGACAGTGTTGTCTATAAGTCATGTCAACAGCTTGA
AA
GTGGAGTCTGAGTGTTCTGCTCCAGGGGAGCAGCCCAAGTTTCTGGGAATTCGTGAACAGCGGGTTAC
A
GGGCTGATGATTTTTATCCTGATGGGCCTCTCTGTGTTCATGACTTCAGTATTAAAGTTTATCCCAATG
CCA
GTTTTGTACGGTGTTTTTCTTTATATGGGAGTTTCATCGTTGAAAGGAATTCAGTTTTTTGACCGTA
TC
AAGTTATTTGGAATGCCTGCCAAGCACCAGCCCGACCTAATCTACCTCCGCTATGTCCCCCTGTGGAA
G
GTGCACGTGTTCACGGTCGTCCAGCTGACCTGCCTAGTCCTGCTGTGGGTGATCAAAGCCTCTGCTGCT
GCA
GTAGTTTTTCCCATGATGGTTCTTGCATTAGTCTTTGTGCGCAAGCTCATGGATCTCTGTTTCACAA
AG
AGAGAACTCAGTTGGCTTGATGACCTCATGCCAGAAAGTAAGAAAAAGAAAGAAGATGACAAAAAGAA
A
AAAGAGAAAGAGGAAGCTGAACGGATGCTTCAGGATGATGAGGACACTGTGCACCTCCCATTCGAAAGA
GGG
AGTCTCCTGCAGATTCCAGTGAAAACTCTAAAATATAGTATTGACCCTTCAGTTGTTAACATATCAG
AT
GAAATGGCCAAAACTGCCCAGTGGAAGGCACTTTCCATGAATACTGAGAATGCCAAAGTAACGAGACC
T
AACACGAGCCCTGAAAAGCCTGTGAGTGTGACAATAAATTTCGAAGATGAACCGTCAAAAAAATACATG
GAT
GCTGAAACTTCATTGTAA


Translation (1126 aa):
MERFQLARKLHGPDEEAVVDLGKTSSTVNTKFEKEELESHRAVYVGVHVPFSKESRRRHKHRGHKHHHRR
R
KDKDSDKEDGRESPSY
DTPSQRVQFILGTEDDDEEHIPHDLFTEMDELCYRDGEEYEWKETARWLKFEE
D
VEDGGDRWSKPYVATLSLHSLFELRSCILNGTVMLDMRASTLDEIA
DMVLDNMIASGQLDDSIRENVRE
A
LLKRHHHQNEKRFTSRIPLVRSFADIGKKHSDPHLLERN
GILASPQSAPGNLDNSKSGEMKGNGSGGSR
E
NSTVDFSK
VDMNFMRKIPTGAEASNVLVGEVDFLERPIIAFVRLAPAVLLSGLTEVPVPTRFLFLLLGP
A
GKAPQYHEIGRSIATLMTDE
IFHDVAYKAKDRNDLLSGIDEFLDQVTVLPPGEWDPSIRIEPPKSVPSQ
E
KRKIPVFPNGSAAMSVDPPKEDDHHAGPELQRTG
RLFGGLILDIKRKAPFFLSDFKDALSLQCLASILF
L
YCACMSPVITFGGLLGEATEGRI
SAIESLFGASLTGIAYSLFAGQPLTILGSTGPVLVFEKILFKFCRD
Y
HLSYLSLRTSIGLWTSFLCIVLVATDASSLVCYITRFTEEAFAALICIIFIYEALEKLFHLGEIYAFNM
H
NNLDELTSY
TCVCAEPSNPSNETLELWKRKNITAYSVSWGNLTVSECKTFHGMFVGSACGPHGPYVPDV
L
FWCVVLFFTTFFLSSFLKQFKTKRYFPTK
VRSTISDFAVFLTIVIMVAIDYLVGIPSPKLHVPEKFEPT
D
PSRGWIISPLGDNPWWTLLIAAVPALLCTILIFMDQQITAVIINRKEHKLK
KGAGYHLDLLMVGVMLGV
C
SIMGLPWFVAATVLSISHVNSLKVESECSAPGEQPKFLGIREQRVTGLMIFILMGLSVFMTSVLK
FIPM
P
VLYGVFLYMGVSSLKGIQ
FFDRIKLFGMPAKHQPDLIYLRYVPLWKVHVFTVVQLTCLVLLWVIKASAA
A
VVFPMM
VLALVFVRKLMDLCFTKRELSWLDDLMPESKKKKEDDKKKKEKEEAERMLQDDEDTVHLPFER
G
SLLQIPVKTLKY
SIDPSVVNISDEMAKTAQWKALSMNTENAKVTRPNTSPEKPVSVTINFEDEPSKKYM
D
AETSL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser