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Report for CCDS88626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88626.1 Public Mus musculus 14 Ldb3 23 108 98 CCDS HistoryNCBI Gene:24131Re-query CCDS DB by CCDS ID:88626.1Re-query CCDS DB by GeneID:24131See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228044.1 ENSMUSP00000154758.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228044.1Link to Ensembl Protein Viewer:ENSMUSP00000154758.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228044Re-query CCDS DB by Protein ID:ENSMUSP00000154758
Original member Current member NCBI NM_001039073.2 NP_001034162.1 Accepted alive Link to Nucleotide Sequence:NM_001039073.2Link to Protein Sequence:NP_001034162.1Re-query CCDS DB by Nucleotide ID:NM_001039073Re-query CCDS DB by Protein ID:NP_001034162Link to BLAST:NP_001034162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034162.1 622 Q9JKS4-4 622 100% 0 0

Chromosomal Locations for CCDS 88626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34529460 34529549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34536565 34536680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34541868 34541988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34542427 34542607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34543973 34544417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34552177 34552322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34566857 34566893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34567398 34567567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34569713 34569727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34571718 34571921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34572990 34573012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34578595 34578670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34579176 34579327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34588377 34588469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGTCTTACAGTGTGACTCTGACTGGGCCTGGGCCCTGGGGCTTCCGTCTGCAGGGAGGCAAGGACTTCA
ACATGCCCCTCACTATCTCCCGGATCACTCCAGGCAGCAAGGCAGCCCAGTCCCAGCTCAGCCAAGGAGA
CCTGGTGGTGGCCATTGATGGCGTCAACACAGACACCATGACCCACCTGGAGGCCCAGAACAAGATCAAG
TCGGCCAGCTACAACCTGAGCCTCACTCTACAGAAGTCCAAGCGGCCTATTCCCATCTCCACGACAGCGC
CTCCCATCCAGTCCCCGCTGCCAGTGATCCCCCACCAGAAGGTGGTAGCCAATTCTCCAGCCAATGCTGA
CTACCAGGAACGCTTCAACCCCAGCGTCCTGAAGGACTCAGCCCTGTCCACCCACAAGCCCATTGAAGTG
AAGGGCTTGGGAGGCAAGGCCACTATCATCCACGCTCAGTACAACACCCCGATCAGCATGTACTCACAGG
ATGCTATCATGGACGCCATCGCGGGGCAGGCCCAGGCCCAGGGCAGTGACTTCAGTGGGGCGTCTCCGCT
GGCGAGCCTCCCTGTGAAAGACTTGGCGGTGGACAGCGCCTCTCCTGTGTACCAGGCTGTGATCAAAACC
CAAAGCAAGCCGGAAGATGAGGCTGATGAGTGGGCCCGCCGGTCCTCCAACCTGCAGTCTCGCTCCTTCC
GCATCCTGGCCCAGATGACCGGGACAGAATACATGCAAGACCCTGATGAAGAGGCTCTGCGAAGGTCAAG
GCCACAGGCCTCTGCTTACAGTCCTGCAGCCGCCGCTTCTCCAGCACCCTCTGCCCATACCAGCTACAGC
GAGGGTCCAGCTGCCCCTGCACCCAAGCCTCGGGTCGTAACCACTGCCAGCATCCGGCCTTCTGTCTACC
AGCCAGTGCCTGCATCTTCCTACAGCCCATCTCCAGGAGCCAATTACAGTCCAACTCCCTATACCCCTTC
GCCAGCTCCTGCTTATACCCCCTCTCCTGCTCCCACCTATACCCCCTCACCTGCACCTACATACTCCCCT
TCCCCTGCACCAGCTTATACCCCCTCACCTGCCCCAAACTATACCCCTACACCATCAGCTGCCTACAGTG
GGGGCCCTTCAGAATCTGCCAGCCGTCCACCCTGGGTGACCGATGACAGCTTCTCTCAGAAGTTTGCTCC
TGGAAAGAGCACTACCACTGTCAGCAAGCAGACCCTGCCCCGGGGGGCTCCAGCCTACAACCCAACAGGT
CCACAAGTGACACCTCTTGCCAGGGGCACCTTCCAGAGAGCTGAGCGCTTCCCAGCTAGCAGCCGGACTC
CCCTCTGTGGGCACTGTAACAATGTCATCAGGGGCCCTTTTCTGGTGGCCATGGGCCGCTCTTGGCACCC
AGAAGAGTTCAATTGTGCCTACTGCAAGACCTCCCTAGCAGATGTGTGCTTTGTGGAGGAGCAGAACAAC
GTTTACTGCGAGCGGTGTTACGAGCAGTTCTTTGCCCCGATCTGTGCCAAATGTAACACCAAAATCATGG
GGGAAGTGATGCACGCTCTGCGACAGACATGGCACACCACCTGCTTTGTCTGTGCAGCCTGCAAGAAGCC
CTTTGGGAACAGCCTCTTCCACATGGAGGATGGAGAGCCATACTGTGAGAAAGACTACATCAACCTGTTC
AGCACCAAGTGCCATGGATGCGATTTCCCTGTGGAAGCTGGTGACAAGTTTATCGAGGCCCTGGGGCACA
CCTGGCATGACACCTGCTTCATTTGTGCGGTCTGCCACGTGAATCTGGAGGGTCAGCCATTCTACTCTAA
GAAAGACAAACCACTGTGCAAGAAGCACGCACATGCCATCAACGTGTAG

Translation (622 aa):
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK
SASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQERFNPSVLKDSALSTHKPIEV
KGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGASPLASLPVKDLAVDSASPVYQAVIKT
QSKPEDEADEWARRSSNLQSRSFRILAQMTGTEYMQDPDEEALRRSRPQASAYSPAAAASPAPSAHTSYS
EGPAAPAPKPRVVTTASIRPSVYQPVPASSYSPSPGANYSPTPYTPSPAPAYTPSPAPTYTPSPAPTYSP
SPAPAYTPSPAPNYTPTPSAAYSGGPSESASRPPWVTDDSFSQKFAPGKSTTTVSKQTLPRGAPAYNPTG
PQVTPLARGTFQRAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQNN
VYCERCYEQFFAPICAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLF
STKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLCKKHAHAINV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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