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Report for CCDS88627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88627.1 Public Mus musculus 14 Ldb3 23 108 98 CCDS HistoryNCBI Gene:24131Re-query CCDS DB by CCDS ID:88627.1Re-query CCDS DB by GeneID:24131See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227819.1 ENSMUSP00000154119.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227819.1Link to Ensembl Protein Viewer:ENSMUSP00000154119.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227819Re-query CCDS DB by Protein ID:ENSMUSP00000154119
Original member Current member NCBI NM_001039075.2 NP_001034164.1 Accepted alive Link to Nucleotide Sequence:NM_001039075.2Link to Protein Sequence:NP_001034164.1Re-query CCDS DB by Nucleotide ID:NM_001039075Re-query CCDS DB by Protein ID:NP_001034164Link to BLAST:NP_001034164.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034164.1 288 Q9JKS4-6 288 100% 0 0

Chromosomal Locations for CCDS 88627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34561785 34561881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34566857 34566893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34567398 34567567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34569713 34569727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34571718 34571921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34572990 34573012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34578595 34578670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34579176 34579327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34588377 34588469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGTCTTACAGTGTGACTCTGACTGGGCCTGGGCCCTGGGGCTTCCGTCTGCAGGGAGGCAAGGACTTCA
AC
ATGCCCCTCACTATCTCCCGGATCACTCCAGGCAGCAAGGCAGCCCAGTCCCAGCTCAGCCAAGGAGA
C
CTGGTGGTGGCCATTGATGGCGTCAACACAGACACCATGACCCACCTGGAGGCCCAGAACAAGATCAAG
TCG
GCCAGCTACAACCTGAGCCTCACTCTACAGAAGTCCAAGCGGCCTATTCCCATCTCCACGACAGCGC
CT
CCCATCCAGTCCCCGCTGCCAGTGATCCCCCACCAGAAGGTGGTAGCCAATTCTCCAGCCAATGCTGA
C
TACCAGGAACGCTTCAACCCCAGCGTCCTGAAGGACTCAGCCCTGTCCACCCACAAGCCCATTGAAGTG
AAG
GGCTTGGGAGGCAAGGCCACTATCATCCACGCTCAGTACAACACCCCGATCAGCATGTACTCACAGG
AT
GCTATCATGGACGCCATCGCGGGGCAGGCCCAGGCCCAGGGCAGTGACTTCAGTGGGGCGTCTCCGCT
G
GCGAGCCTCCCTGTGAAAGACTTGGCGGTGGACAGCGCCTCTCCTGTGTACCAGGCTGTGATCAAAACC
CAA
AGCAAGCCGGAAGATGAGGCTGATGAGTGGGCCCGCCGGTCCTCCAACCTGCAGTCTCGCTCCTTCC
GC
ATCCTGGCCCAGATGACCGGGACAGAATACATGCAAGACCCTGATGAAGAGGCTCTGCGAAGGTCAAG
G
GAAAGGTTTGAAACGGAACGTAACAGCCCACGTTTTGCCAAATTGCGCAACTGGCACCACGGCCTTTCA
GCC
CAAATCCTTAATGTTAAAAGCTAA


Translation (288 aa):
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK
S
ASYNLSLTLQ
KSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQERFNPSVLKDSALSTHKPIEV
K
GLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFS
GASPLASLPVKDLAVDSASPVYQAVIKT
Q
SKPEDEADEWARRSSNLQSRSFRILAQMTGTEY
MQDPDEEALRRSRERFETERNSPRFAKLRNWHHGLS
A
QILNVKS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser