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Report for CCDS88696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88696.1 Public Mus musculus 14 Adra1a 23 108 98 CCDS HistoryNCBI Gene:11549Re-query CCDS DB by CCDS ID:88696.1Re-query CCDS DB by GeneID:11549See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225182.1 ENSMUSP00000153103.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225182.1Link to Ensembl Protein Viewer:ENSMUSP00000153103.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225182Re-query CCDS DB by Protein ID:ENSMUSP00000153103
Original member NCBI NM_001271761.1 NP_001258690.1 Updated not alive Link to Nucleotide Sequence:NM_001271761.1Link to Protein Sequence:NP_001258690.1Re-query CCDS DB by Nucleotide ID:NM_001271761Re-query CCDS DB by Protein ID:NP_001258690
Current member NCBI NM_001271761.2 NP_001258690.1 Accepted alive Link to Nucleotide Sequence:NM_001271761.2Link to Protein Sequence:NP_001258690.1Re-query CCDS DB by Nucleotide ID:NM_001271761Re-query CCDS DB by Protein ID:NP_001258690Link to BLAST:NP_001258690.1

Chromosomal Locations for CCDS 88696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 66637578 66638460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66770585 66770589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGTGCTTCTTTCTGAAAATGCTTCTGAAGGCTCCAACTGCACCCACCCGCCAGCACAGGTGAACATTT
CTAAGGCCATTCTACTTGGGGTGATCTTGGGGGGCCTCATCATTTTCGGGGTCTTGGGGAATATTTTAGT
GATCCTCTCGGTGGCCTGTCATCGGCATCTGCACTCGGTGACTCACTACTACATTGTCAACCTGGCTGTG
GCAGACCTCCTCCTCACCTCCACCGTGCTGCCCTTCTCTGCCATCTTTGAGATCCTGGGCTACTGGGCCT
TTGGCAGGGTGTTCTGCAACATCTGGGCGGCGGTGGACGTCTTATGCTGCACAGCGTCCATCATGGGCCT
CTGCATCATCTCCATCGACCGATACATTGGTGTGAGCTACCCGCTGCGCTACCCCACCATTGTCACCCAG
AGGAGGGGCGTCAGGGCTCTGCTCTGCGTCTGGGCGCTTTCCTTGGTCATCTCCATCGGACCCCTGTTCG
GCTGGAGGCAGCAGGCTCCGGAGGATGAGACCATCTGCCAAATCAATGAGGAGCCAGGATACGTGCTGTT
CTCAGCGCTGGGCTCTTTCTACGTGCCACTGACCATCATCCTGGTTATGTACTGTCGAGTCTACGTGGTA
GCCAAGAGAGAAAGCCGAGGCCTCAAGTCCGGCCTCAAGACCGACAAGTCAGACTCAGAGCAAGTGACGC
TCCGTATCCACCGTAAAAATGTCCCTGCAGAAGGCAGCGGAGTAAGCAGTGCCAAGAATAAGACTCACTT
CTCCGTGAGGCTGCTCAAGTTTTCCCGAGAGAAGAAAGCCGCCAAGACGCTGGGCATTGTGGTGGGATGC
TTCGTCCTCTGCTGGCTGCCATTCTTCCTCGTGATGCCCATTGCTTAG

Translation (295 aa):
MVLLSENASEGSNCTHPPAQVNISKAILLGVILGGLIIFGVLGNILVILSVACHRHLHSVTHYYIVNLAV
ADLLLTSTVLPFSAIFEILGYWAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQ
RRGVRALLCVWALSLVISIGPLFGWRQQAPEDETICQINEEPGYVLFSALGSFYVPLTIILVMYCRVYVV
AKRESRGLKSGLKTDKSDSEQVTLRIHRKNVPAEGSGVSSAKNKTHFSVRLLKFSREKKAAKTLGIVVGC
FVLCWLPFFLVMPIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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