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Report for CCDS88718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88718.1 Public Mus musculus 14 Epsti1 23 108 98 CCDS HistoryNCBI Gene:108670Re-query CCDS DB by CCDS ID:88718.1Re-query CCDS DB by GeneID:108670See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88718.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227903.1 ENSMUSP00000154502.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227903.1Link to Ensembl Protein Viewer:ENSMUSP00000154502.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227903Re-query CCDS DB by Protein ID:ENSMUSP00000154502
Original member Current member NCBI NM_178825.4 NP_849147.1 Accepted alive Link to Nucleotide Sequence:NM_178825.4Link to Protein Sequence:NP_849147.1Re-query CCDS DB by Nucleotide ID:NM_178825Re-query CCDS DB by Protein ID:NP_849147Link to BLAST:NP_849147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849147.1 229 Q8VDI1-2 229 100% 0 0

Chromosomal Locations for CCDS 88718.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 77904486 77904664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77927170 77927228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77928747 77928830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77931247 77931320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77932148 77932231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77939862 77939935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77963632 77963767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGTACACCCGCAGTAAGGTGGTGGGCCCAGGCTTGGGCACTTCCTCCATCTCTCGGGACCACGCTGGAG
CTGGGCAGCGCAGGGAGCTGGGCTTGCAGCAAAACCGGAGACAGAGTTTGGAGGTGGCAGCTCCCGAGGG
CCCCAAGATGGAGAGGCAGGGGCATGCTGACCAGGGAAGCGCAGGCACATACACCCTGATAGCACCAAAC
GAGAGCAGAAGGCAGAAGATACAGAGAATTGCTGAGCAAGAACTGGCAGACCTGGAGAGATGGAAGCAAC
AGAACAGGGCAAAACCAGTCTACTTGGTGCCACAACGGCTGGGTGGAAGCCAGTCTGAGGCTGAAGTCAG
ACAGAAACAACAGCTGCAACAGATGCGTTCTAAATACCAGCAAAAGCTCAAGAGGGATGAATCTATTCGA
ATCAGGAAGGAAGCTGAGGAAGCCAAGTTCCAAAAAATGAAAGCAATCCAGAGGGAGAAGAGTAATAAAC
TAGAGGAGAAAAAGCAACTTCAAGAAGACATCAGAAGAGCCACATTTCGAGAGCATCATCAGTCCAAAAC
GGCTGAGCTCTTGAGCAGACTGGACACAGAGCGGAGAAACAGAAGTGCCTGTCTGATTGCTCCTCCTGCC
ACCCAGTCCTCGAGATGGGTGAGTGGAAACTCACGCAGGCTGCTGTCTGCCACCTTTTGA

Translation (229 aa):
MYTRSKVVGPGLGTSSISRDHAGAGQRRELGLQQNRRQSLEVAAPEGPKMERQGHADQGSAGTYTLIAPN
ESRRQKIQRIAEQELADLERWKQQNRAKPVYLVPQRLGGSQSEAEVRQKQQLQQMRSKYQQKLKRDESIR
IRKEAEEAKFQKMKAIQREKSNKLEEKKQLQEDIRRATFREHHQSKTAELLSRLDTERRNRSACLIAPPA
TQSSRWVSGNSRRLLSATF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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