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Report for CCDS88796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88796.1 Public Mus musculus 15 Rbfox2 23 108 98 CCDS HistoryNCBI Gene:93686Re-query CCDS DB by CCDS ID:88796.1Re-query CCDS DB by GeneID:93686See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88796.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000227533.1 ENSMUSP00000154209.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227533.1Link to Ensembl Protein Viewer:ENSMUSP00000154209.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227533Re-query CCDS DB by Protein ID:ENSMUSP00000154209
Original member NCBI NM_001286419.1 NP_001273348.1 Updated not alive Link to Nucleotide Sequence:NM_001286419.1Link to Protein Sequence:NP_001273348.1Re-query CCDS DB by Nucleotide ID:NM_001286419Re-query CCDS DB by Protein ID:NP_001273348
Current member NCBI NM_001286419.2 NP_001273348.1 Accepted alive Link to Nucleotide Sequence:NM_001286419.2Link to Protein Sequence:NP_001273348.1Re-query CCDS DB by Nucleotide ID:NM_001286419Re-query CCDS DB by Protein ID:NP_001273348Link to BLAST:NP_001273348.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273348.1 346 Q8BP71-4 346 100% 0 0

Chromosomal Locations for CCDS 88796.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77084162 77084206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77085578 77085650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77086067 77086155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77091812 77091854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77097940 77098072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77099240 77099332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77099439 77099492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77102879 77102939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77113605 77113658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77116921 77117064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77132717 77132941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77153530 77153556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGAGAAAAAGAAAATGGTAACTCAGGGTAACCAGGAGCCAACAACAACTCCTGACGCAATGGTTCAGC
CTTTTACTACCATCCCGTTCCCACCACCTCCACAAAATGGAATTCCCACAGAATATGGAGTGCCACACAC
TCAGGACTATGCCGGCCAGACCAGTGAACATAACCTGACCCTCTACGGGAGTACGCAGCCTCATGGAGAA
CAGAGTAGCAATTCACCCAGCAACCAGAATGGATCTCTCACGACAGAAGGTGGAGCACAGACAGACGGAC
AACAGTCACAGACACAAAGTAGTGAAAATTCAGAGAGTAAATCTACGCCCAAGCGACTACATGTCTCTAA
TATTCCCTTCCGCTTCCGAGACCCTGACCTCCGGCAGATGTTTGGGCAGTTTGGCAAAATCCTAGATGTG
GAAATAATCTTTAATGAGCGCGGCTCCAAGGTGAATAATGCAACAGCACGGGTCATGACCAACAAGAAGA
TGGTCACGCCATATGCAAATGGCTGGAAGTTAAGCCCAGTAGTTGGAGCTGTGTATGGTCCTGAGTTATA
TGCAGCATCCAGCTTTCAAGCTGATGTGTCCCTAGGCAATGAGGCGGCTGTGCCCTTGTCAGGAAGAGGA
GGCATCAACACTTACATCCCTCTAATCATTCCTGGCTTCCCTTACCCAACTGCAGCCACCACGGCAGCTG
CTTTCCGAGGAGCCCATCTGAGGGGCAGAGGGCGGACAGTGTATGGTGCAGTCCGAGCGGTACCTCCAAC
AGCCATCCCCGCCTATCCAGGAATAGTGTTACAGGAACCAATCATTAGCGCTAAAATACCTCAGGGTGGA
TATGCAGCCTACAGATATGCACAGCCTGCTACTGCAACCGCAGCCACAGCTGCTGCAGCCGCTGCAGCCG
CTTACAGCGACGGTTACGGCAGGGTGTACACAGCTGACCCCTACCATGCCCTCGCCCCTGCCGCCAGCTA
TGGAGTTGGCGCTGTGGCGAGTTTGTACCGAGGTGGCTACAGCCGATTTGCCCCCTACTGA

Translation (346 aa):
MEKKKMVTQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTSEHNLTLYGSTQPHGE
QSSNSPSNQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV
EIIFNERGSKVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNEAAVPLSGRG
GINTYIPLIIPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGIVLQEPIISAKIPQGG
YAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVASLYRGGYSRFAPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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