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Report for CCDS88867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88867.1 Public Mus musculus 16 Cdip1 23 108 98 CCDS HistoryNCBI Gene:66626Re-query CCDS DB by CCDS ID:88867.1Re-query CCDS DB by GeneID:66626See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88867.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117713.7 ENSMUSP00000113618.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117713.7Link to Ensembl Protein Viewer:ENSMUSP00000113618.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117713Re-query CCDS DB by Protein ID:ENSMUSP00000113618
Original member Current member NCBI NM_001358081.2 NP_001345010.1 Accepted alive Link to Nucleotide Sequence:NM_001358081.2Link to Protein Sequence:NP_001345010.1Re-query CCDS DB by Nucleotide ID:NM_001358081Re-query CCDS DB by Protein ID:NP_001345010Link to BLAST:NP_001345010.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345010.1 191 Q9DB75-2 191 100% 0 0

Chromosomal Locations for CCDS 88867.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4768538 4768649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4768745 4768967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4769640 4769795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4770043 4770127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGTCTAATGAGCCACCCCCTCCTTATCCAGGAGGTCCTACAGCCCCACTACTGGAGGAAAAAAGTGGAG
CCCCACTTACCCCAGGCCGAACCTCACCAGCTGTGATGCAGCCTCCACCAGGCATGCCACTGCCTTCTGC
TGACATTGCCCCTCCACCCTATGAGCCACCTGGCCAACCAGTGCCTCAGCCTGGCTTTGTGCCCCCCCAT
ATGAATGCAGATGGCACCTACATGCCTGCAGGACCCTACCCACCAGGGCCCTACCCTGGCCCTGGGGGCC
ACACGGCCACAGTATTGGTCCCATCAGGGGCAGCCACCACGGTGACAGTACTGCAGGGAGAGATCTTTGA
AGGCGCACCAGTGCAGACAGTGTGTCCTCACTGCCAGCAGGCCATCACCACCAAGATCTCCTACGAGATA
GGCCTGATGAACTTTGTGCTGGGTTTCTTCTGCTGCTTCATGGGGTGTGACCTGGGCTGCTGTTTGATCC
CCTGCCTCATCAATGACTTCAAGGATGTGACGCACACATGTCCCAGCTGCAAAGCCTACATCTGCACATA
CAAGCGCTTGTGCTAA

Translation (191 aa):
MSNEPPPPYPGGPTAPLLEEKSGAPLTPGRTSPAVMQPPPGMPLPSADIAPPPYEPPGQPVPQPGFVPPH
MNADGTYMPAGPYPPGPYPGPGGHTATVLVPSGAATTVTVLQGEIFEGAPVQTVCPHCQQAITTKISYEI
GLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYICTYKRLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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