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Report for CCDS89111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89111.1 Public Mus musculus 17 9830107B12Rik 23 108 98 CCDS HistoryNCBI Gene:328829Re-query CCDS DB by CCDS ID:89111.1Re-query CCDS DB by GeneID:328829See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233614.1 ENSMUSP00000156923.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233614.1Link to Ensembl Protein Viewer:ENSMUSP00000156923.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233614Re-query CCDS DB by Protein ID:ENSMUSP00000156923
Original member Current member NCBI NM_001177897.1 NP_001171368.1 Accepted alive Link to Nucleotide Sequence:NM_001177897.1Link to Protein Sequence:NP_001171368.1Re-query CCDS DB by Nucleotide ID:NM_001177897Re-query CCDS DB by Protein ID:NP_001171368Link to BLAST:NP_001171368.1

Chromosomal Locations for CCDS 89111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48128439 48128574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48131577 48131667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48145397 48145561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48145951 48146008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGCCTGGGAGCCCACATACCTGCTCTCCCCAGTGCTGCTGCTGCTCCTGGCCTCAGGTGCCGAGAAGC
CA
AGATTCTCCATCCTACAGTCTTCTAAGTTCAACTTCTTCACTGTCACCATGAGTAAGCTCAGGATGAG
T
GACTCGGGCATCTATCACTGTGGGATCGCTGCAAATACCAGGATAACTTATCTCAGAGGTATCCAACTG
GTG
GTGTCAAAAGATGATTCAAGTGCTCCTGCCAATGGGACATTTCCAACTCTGAGAGCTCACACTTTTA
GG
ACCACACAGGACCCGATCTCCATTGCTGCCAGGGGCTCTGTATCCAGTGTTACTATTCCCGTGGTCTG
T
GGACTCCTCAGCAAGACACTGGTATTCACGGTCTTATTCATTGTCACACAGAAGTCATTTGGACGACAG
GCC
ATGAAGGCACACAACAGTAACTCCTGA


Translation (149 aa):
MAWEPTYLLSPVLLLLLASGAEKPRFSILQSSKFNFFTVTMSKLRMSDSGIYHCGIAANTRITYLRGIQL
V
VSK
DDSSAPANGTFPTLRAHTFRTTQDPISIAARGSVSSVTIPVVCGLLSKTLVFTVLFIVTQKSFGRQ
A
MKAHNSNS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser