NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89115.1 Public Mus musculus 17 Treml1 23 108 98 CCDS HistoryNCBI Gene:71326Re-query CCDS DB by CCDS ID:89115.1Re-query CCDS DB by GeneID:71326See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225849.1 ENSMUSP00000153104.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225849.1Link to Ensembl Protein Viewer:ENSMUSP00000153104.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225849Re-query CCDS DB by Protein ID:ENSMUSP00000153104
Original member Current member NCBI NM_001289451.1 NP_001276380.1 Accepted alive Link to Nucleotide Sequence:NM_001289451.1Link to Protein Sequence:NP_001276380.1Re-query CCDS DB by Nucleotide ID:NM_001289451Re-query CCDS DB by Protein ID:NP_001276380Link to BLAST:NP_001276380.1

Chromosomal Locations for CCDS 89115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48359937 48359982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48360135 48360467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48364859 48364997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48365508 48365593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48365996 48366048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48366723 48366797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGACTGCTACCTGCTGCTGCTGCTGCTGCTCCTGGGACTAGCAGGCCAAGGCTCAGCTGACAGTCATC
CCGAGGTGCTACAGGCACCGGTGGGGTCATCCATTCTAGTGCAGTGCCACTACCGGCTCCAGGATGTGAG
GGCTCTCAAGGTGTGGTGCCAGTTCTTGCAGGAAGGCTGCCACCCACTAGTGACCTCAGCGGTGGACCGA
AGAGCTCCGGGAAACGGGCGCATATTCCTCACTGACCTGGGTGGGGGGCTCCTGCAGGTGGAAATGGTGA
CCCTGCAGGAGGAGGACACAGGGGAGTATGGTTGTGTGGTGGAGGGAGCGGCAGGACCCCAGACCCTGCA
TAGGGTCTCCCTGTTGGTTCTTCCACCAGTCCCTGGCCCAAGAGAGGGGGAGGAAGCAGAGGACGAGAAA
GAAACCTATAGAATCGGAACCGGAAGTCTGCTCGAGGACCCCTCCTTGGACCCTTCCGCGAGTGCTGGTC
CTCACGAGTTCAGACGGCGTGAGAACAGTATCCCCCTGATCTGGGGTGCTGTGCTCCTGTTGGCCCTGGT
GGTGGTGGCTGTGGTGATATTTGCTGTGATGGCCAGAAAGAAAGGGAACAGGCTTGTTGTCTGTGGCCCG
TCCCAGAGCACTGGAGTTCCAGGAATGGCTCCTCTCTTGATCCACCATCAAGCGAACCCCCAGCTCCACC
CTCACAGCCCCCTCTGCCTCCTAAGGTCCTGA

Translation (243 aa):
MDCYLLLLLLLLGLAGQGSADSHPEVLQAPVGSSILVQCHYRLQDVRALKVWCQFLQEGCHPLVTSAVDR
RAPGNGRIFLTDLGGGLLQVEMVTLQEEDTGEYGCVVEGAAGPQTLHRVSLLVLPPVPGPREGEEAEDEK
ETYRIGTGSLLEDPSLDPSASAGPHEFRRRENSIPLIWGAVLLLALVVVAVVIFAVMARKKGNRLVVCGP
SQSTGVPGMAPLLIHHQANPQLHPHSPLCLLRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH