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Report for CCDS89148.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89148.1 Public Mus musculus 17 Clip4 23 108 98 CCDS HistoryNCBI Gene:78785Re-query CCDS DB by CCDS ID:89148.1Re-query CCDS DB by GeneID:78785See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89148.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230305.1 ENSMUSP00000154861.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230305.1Link to Ensembl Protein Viewer:ENSMUSP00000154861.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230305Re-query CCDS DB by Protein ID:ENSMUSP00000154861
Original member Current member EBI ENSMUST00000230333.1 ENSMUSP00000154878.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230333.1Link to Ensembl Protein Viewer:ENSMUSP00000154878.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230333Re-query CCDS DB by Protein ID:ENSMUSP00000154878
Original member Current member NCBI NM_001271484.1 NP_001258413.1 Accepted alive Link to Nucleotide Sequence:NM_001271484.1Link to Protein Sequence:NP_001258413.1Re-query CCDS DB by Nucleotide ID:NM_001271484Re-query CCDS DB by Protein ID:NP_001258413Link to BLAST:NP_001258413.1

Chromosomal Locations for CCDS 89148.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 71789883 71790015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71798957 71799096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71800799 71800892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71801775 71801936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71803556 71803674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71806505 71806741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71810847 71810982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71824690 71824830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71827692 71827781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71828507 71828650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71831205 71831339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71834184 71834307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71837694 71837758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71849892 71849968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGACCATAGAGGACCTCCCGGATATTCCATTGGAAGGAAGCTCTCTGATTGGAAGATACCCATTTTTAT
TCACAGGCTCAGATACATCTGTTATCTTCTCCATTTCTGCAGCACCGATGCCTTCGGACTGCGAGTTTTC
TTTCTTTGACCCTAACGATGCATCATGCCAGGAAATTCTCTTCGACCCCAAAACTTCAGTCTCAGAATTA
TTTGCTATTTTAAGACAGTGGGTTCCTCAGGTCCAGCAGAACATAGACATTATTGGAAATGAGATTCTTA
AGAGAGGCTGCAATGTGAACGATAGAGACGGACTGACGGACATGACTCTGCTACATTACACTTGCAAGTC
TGGGGCTCATGGCATCGGTGATATTGAGACAGCTGTAAAATTTGCTGCTCAACTTATAGACCTGGGAGCA
GACGCGAGTTTGCGGAGTCGCTGGACGAACATGAACGCTTTGCATTACGCTTCGTACTTTGATGTCCCAG
AGCTTATCAGGGTGATTTTGAAGACATCGAAACCAAAAGATGTGGATGCCACTTGCAGCGACTTTAATTT
TGGGACAGCCCTGCACATTGCAGCACATAACTTGTGTGCAGGAGCCGTGAAAACCTTGCTGGAGCTGGGA
GCGAACCCTGCCTTTAGGAATGACAAAGGGCAGATCCCTGCAGAAGTTGTTCCAGACCCAGTGGACATGC
CTCTGGAGATGGCCGATGCTGCAGCGATCGCGAAGGAAATCAAACAGATGCTCTTGGATGCGGTGCCTCT
GCCCTGTACCAGCGCTAAGGCCGTGCTTCCAAACTCCGATCACACCACCAGCAGGGCCATGCTGACATCT
CTCGGCCTGAAGTTGGGGGACCGTGTTGTCATCGCAGGGCAGAAGGTTGGAACATTAAGATTTTGTGGAA
CAACGGAGTTTGCAAGCGGGCAGTGGGCTGGCATTGAGCTGGACGAGCCAGAAGGGAAGAACAACGGCAG
TGTTGGGAGAGTCCAGTACTTCAAGTGTGCCCCCAAATACGGTATTTTTGCTCCCCTTTCAAAGATAAGT
AAATTAAAAGACGGGAGGAAGACCACCACACACACTCCTTCCACGAGAGCCACCCCACACGCCCGATCCC
AGAAGGTCGATGTAGCCCACTTCACATCCAGAGTCAATTCCGGGTTGACGACATCTAAAAAGGAGACTGC
TTCTGAATCCACACTGACATTGCCTCCCAGTGAAGAACCGAAAACTGTAGCGGAAAATGACGCTGCCCAG
CCTGGGTCCATGAGCAGTTCCTCCTCCTCCTCCTCCCTGGACCACAAGCAGAGCTACCCGAAGAAGCTGA
CCACAAGCAGCGGTGGCAAGAAGACTCTGAGCAAAAGCCCCTCTCTCCCGTCCAGAGCCAGTGCTGGTTT
GAAATCTTCAGCCACATCTGCAGCAAATAACAGTCACCATGAAGGAGCGCTCCACCTTGGAGAAAGGGTG
CTGGTCGTAGGCCAGCGAGTAGGCACCATTAAGTTCTTTGGAACAACAAACTTTGCTCCAGGGTATTGGT
ACGGCATAGAGCTGGAGAAGCCCCACGGGAAGAATGATGGTTCGGTTGGAGGTGTACAGTATTTTAGTTG
CTCTCCGAGATATGGAATATTTGCGCCCCCGTCCAGGGTACAGAGGCTATCAGATTCCCTGGATACGCTT
TCAGAAATATCTTCAAATAAACAGAATCACTCTTATCCTGGTTTTAGGAGAAGTTTCAGCACCACCTCTG
CTTCTTCTCAAAAAGAGATTAACAGGAGAAATGCTTTTGCCAAGTGA

Translation (598 aa):
MTIEDLPDIPLEGSSLIGRYPFLFTGSDTSVIFSISAAPMPSDCEFSFFDPNDASCQEILFDPKTSVSEL
FAILRQWVPQVQQNIDIIGNEILKRGCNVNDRDGLTDMTLLHYTCKSGAHGIGDIETAVKFAAQLIDLGA
DASLRSRWTNMNALHYASYFDVPELIRVILKTSKPKDVDATCSDFNFGTALHIAAHNLCAGAVKTLLELG
ANPAFRNDKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQMLLDAVPLPCTSAKAVLPNSDHTTSRAMLTS
LGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKIS
KLKDGRKTTTHTPSTRATPHARSQKVDVAHFTSRVNSGLTTSKKETASESTLTLPPSEEPKTVAENDAAQ
PGSMSSSSSSSSLDHKQSYPKKLTTSSGGKKTLSKSPSLPSRASAGLKSSATSAANNSHHEGALHLGERV
LVVGQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRLSDSLDTL
SEISSNKQNHSYPGFRRSFSTTSASSQKEINRRNAFAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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