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Report for CCDS89199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89199.1 Public Mus musculus 18 Rnf125 23 108 98 CCDS HistoryNCBI Gene:67664Re-query CCDS DB by CCDS ID:89199.1Re-query CCDS DB by GeneID:67664See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89199.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234316.1 ENSMUSP00000157304.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234316.1Link to Ensembl Protein Viewer:ENSMUSP00000157304.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234316Re-query CCDS DB by Protein ID:ENSMUSP00000157304
Original member Current member NCBI NM_001364973.1 NP_001351902.1 Accepted alive Link to Nucleotide Sequence:NM_001364973.1Link to Protein Sequence:NP_001351902.1Re-query CCDS DB by Nucleotide ID:NM_001364973Re-query CCDS DB by Protein ID:NP_001351902Link to BLAST:NP_001351902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351902.1 233 Q9D9R0-1 233 100% 0 0

Chromosomal Locations for CCDS 89199.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 20961637 20961800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20974299 20974455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20977729 20977823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20979051 20979141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20981171 20981278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20983099 20983185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGGCTCCCTGCTGAGCAGCGACAGCTCCAAGTCCGCGCCCGCCTCCGCCACCCCGCGGACTCTGGAGC
GCAGCGGGGACTCGGAGCTGCCCATCACCTCCTTCGACTGCTCAGTGTGTCTGGAGGTGCTACACCAGCC
GGTCCGGACCCGCTGTGGCCACGTGTTCTGCCGATCTTGCATTGCGACCAGTATAAAGAACAATAATAAA
TGGACATGTCCATACTGCCGGGCATACCTTCCTTCAGAGGGAGTGCCCGCAACTGACATAGCCAAGAGGA
TGAAGTCAGAATACCAGAACTGTGCTGAGTGTGGAACTCTGGTTTGCCTCAGTGACATGAGGGCGCACAT
AAGGACCTGTGAGAAGTACATCGATAAATATGGCCCGCTGCTAGAACTTGGCGACACCACAGCAAGATGT
GTATGTCCATTTTGTCAGCGGGAACTGGATGAAGACTGCTTGCTGGATCATTGCATTATCCACCACAGAT
CAGAAAGGAGGCCCGTGTTCTGTCCACTTTGCCATTCACGACCTGATGAAAGCCCAAGTACCTTCAATGG
CAGTTTAATTAGACATTTGCAAGTCAGTCACACTTTGTTTTATGATGATTTCATAGATTTTGATATAATT
GAGGAAGCCATTATTCGCAGAGTGCTAGACCGCTCACTTCTTGAATATGTGAATCAGTCAAACACCACAT
AA

Translation (233 aa):
MGSLLSSDSSKSAPASATPRTLERSGDSELPITSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNK
WTCPYCRAYLPSEGVPATDIAKRMKSEYQNCAECGTLVCLSDMRAHIRTCEKYIDKYGPLLELGDTTARC
VCPFCQRELDEDCLLDHCIIHHRSERRPVFCPLCHSRPDESPSTFNGSLIRHLQVSHTLFYDDFIDFDII
EEAIIRRVLDRSLLEYVNQSNTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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