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Report for CCDS89244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89244.1 Public Mus musculus 18 Marchf3 23 108 98 CCDS HistoryNCBI Gene:320253Re-query CCDS DB by CCDS ID:89244.1Re-query CCDS DB by GeneID:320253See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035278.6 ENSMUSP00000047946.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035278.6Link to Ensembl Protein Viewer:ENSMUSP00000047946.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035278Re-query CCDS DB by Protein ID:ENSMUSP00000047946
Current member NCBI NM_001374227.1 NP_001361156.1 Accepted alive Link to Nucleotide Sequence:NM_001374227.1Link to Protein Sequence:NP_001361156.1Re-query CCDS DB by Nucleotide ID:NM_001374227Re-query CCDS DB by Protein ID:NP_001361156Link to BLAST:NP_001361156.1

Chromosomal Locations for CCDS 89244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 56775950 56776108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56783019 56783228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56807664 56807868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56811832 56812019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGACAACCAGTCGCTGCAGTCACCTGCCCGAAGTCTTGCCAGACTGCACCAGCTCAGCCGCGCCTGTGG
TGAAGACGGTGGAGGATTGTGGCAGCCTAGTGAATGGGCAGCCACAGTATGTCATGCAAGTTTCAGCCAA
GGACGGGCAGCTGCTGTCAACAGTAGTGCGGACTCTTGCCACCCAGAGCCCCTTCAATGACCGGCCAATG
TGCAGGATCTGCCATGAGGGAAGCAGCCAAGAGGACTTACTCTCTCCGTGTGAATGTACTGGGACCTTGG
GGACCATCCATCGGAGCTGCCTGGAGCACTGGCTGTCATCCTCAAATACCAGCTACTGTGAACTCTGCCA
CTTCAGGTTTGCAGTGGAGCGCAAACCCAGGCCGTTAGTGGAGTGGCTTAGAAACCCTGGCCCCCAGCAT
GAGAAGCGGACTCTGTTTGGAGATATGGTGTGCTTCTTGTTTATAACGCCCCTGGCTACCATCTCAGGCT
GGCTGTGCCTGCGGGGGGCCGTGGATCACCTGCACTTTAGTAGCCGGCTGGAGGCCGTCGGACTCATTGC
CCTCACTGTGGCACTCTTCACCATTTACCTCTTCTGGACACTAGTGTCGTTTAGGTACCACTGTCGATTG
TACAATGAATGGCGTCGGACCAATCAGAGGGTGATTCTCCTCATTCCAAAGTCTGTCAACGTACCTTCTA
ACCAGCAGTCCTTGCTGGGGCTCCACTCAGTCAAGAGGAACTCAAAGGAGACAATTGTTTGA

Translation (253 aa):
MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSPFNDRPM
CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPLVEWLRNPGPQH
EKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVALFTIYLFWTLVSFRYHCRL
YNEWRRTNQRVILLIPKSVNVPSNQQSLLGLHSVKRNSKETIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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