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Report for CCDS89261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89261.1 Under review, update Mus musculus 18 Nars1 23 108 98 CCDS HistoryNCBI Gene:70223Re-query CCDS DB by CCDS ID:89261.1Re-query CCDS DB by GeneID:70223See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 89261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025483.10 ENSMUSP00000025483.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025483.10Link to Ensembl Protein Viewer:ENSMUSP00000025483.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000025483Re-query CCDS DB by Protein ID:ENSMUSP00000025483
Original member NCBI NM_027350.3 NP_081626.2 Updated not alive Link to Nucleotide Sequence:NM_027350.3Link to Protein Sequence:NP_081626.2Re-query CCDS DB by Nucleotide ID:NM_027350Re-query CCDS DB by Protein ID:NP_081626
Current member NCBI NM_027350.4 NP_081626.3 Pending alive Link to Nucleotide Sequence:NM_027350.4Link to Protein Sequence:NP_081626.3Re-query CCDS DB by Nucleotide ID:NM_027350Re-query CCDS DB by Protein ID:NP_081626Link to BLAST:NP_081626.3

Chromosomal Locations for CCDS 89261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 64500518 64500649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64501303 64501434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64501744 64501875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64503508 64503621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64504338 64504473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64504848 64505047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64505157 64505378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64507772 64507858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64509245 64509315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64510453 64510531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64511611 64511700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64511785 64511877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64511984 64512049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64515326 64515405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 64516416 64516458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGTCCTCGGAGGTGATTAGGGGGACTGCAGAGATGGTTCTAGAGCTGTATGTATCTGACCGAGAAGGAA
ATGACGCAACCGGGGATGGAACCAAGGAGAAACCATTTAAAACAGGCCTAAAGGCTTTGATGACAGTTGG
AAAAGAGCCATTTCCCACCATTTATGTGGACTCACAAAAGGAAAATGAGAGATGGGATGTTATTTCTAAG
TCACAGATGAAGAACATTAAAAAGATGTGGCACAGAGAACAGATGAAGAACGACTCTAGGGAGAAGAAAG
AGGCAGAAGATAACTTACGAAGAGAAAAGAACCTGGAGGAAGCAAAAAAAATTATTATTAAAAATGACCC
GAGCCTGCCAGAGCCGGCCTGTGTAAAGATTAGTGCATTAGAAGGATACAGAGGCCAGAGAGTGAAGGTG
TTTGGCTGGGTCCACAGGTTGCGCAGGCAAGGAAAGAATTTGATGTTTTTGGTGTTGCGAGATGGTACGG
GTTATCTTCAGTGTGTCTTGTCAGATGACTTGTGTCAGTGTTACAATGGAGTAGTCCTGTCCACCGAGAG
TAGTGTGGCGGTGTACGGAACACTAAACCTAACTCCAAAGGGCAAACAGGCTCCAGGAGGCCATGAGCTG
AGCTGTGACTTCTGGGAACTGGTGGGGCTGGCCCCGGCTGGAGGAGCTGATAACCTGATCAACGAGGAGT
CTGATGTGGATGTCCAGCTCAACAACCGGCACATGATGATCCGGGGAGAGAACATGTCCAAAATCCTGAA
AGCGCGCTCCATGATCACCAGGTGTTTCCGGGACCACTTCTTCGACAGGGGCTACTGTGAAGTTACCACT
CCAACACTGGTGCAGACGCAGGTGGAAGGTGGGGCCACGCTCTTCAAGCTTGACTATTTCGGGGAAGAAG
CGTTTTTGACCCAGTCCTCACAGTTGTACCTGGAGACCTGCCTTCCAGCCCTGGGAGATGTTTTTTGTAT
AGCCCAGTCATACAGGGCCGAACAGTCCAGGACACGAAGGCACCTGGCTGAGTTCACTCACGTGGAAGCT
GAGTGTCCTTTCCTGACCTTCGAGGACCTCCTGAACCGTTTAGAGGACCTAGTGTGTGATGTGGTGGACA
GAGTCCTGAAGTCACCAGTGGCAAGCATAGTGTATGAGCTCAACCCGAACTTTAAACCCCCCAAGCGGCC
TTTCCGCAGGATGAACTACTCGGATGCTATTGAGTGGCTGAAGGAGCATGATGTCAAGAAAGAAGACGGG
ACTTTCTACGAGTTTGGAGATGATATTCCCGAAGCGCCTGAGAGACTGATGACAGACACCATTAATGAAC
CAATCCTGCTGTGTCGCTTTCCTGTGGAGATCAAGTCTTTCTATATGCAGCGCTGTCCTGAGGATCCTCG
ACTTACTGAATCTGTGGACGTGTTGATGCCCAACGTTGGTGAGATTGTAGGTGGCTCGATGCGCTCCTGG
GACAGTGAGGAGATTCTCGAAGGCTATAAGAGGGAAGGGATTGACCCCGCTCCTTACTACTGGTATACAG
ATCAGAGAAAATATGGCACCTGTCCTCATGGAGGGTATGGCTTGGGCTTGGAACGATTTCTTAGCTGGAT
TCTGAACAGGTATCACATCCGAGATGTGTGCCTGTACCCTCGATTTCTCCAGCGCTGCAGGCCATAA

Translation (558 aa):
MSSEVIRGTAEMVLELYVSDREGNDATGDGTKEKPFKTGLKALMTVGKEPFPTIYVDSQKENERWDVISK
SQMKNIKKMWHREQMKNDSREKKEAEDNLRREKNLEEAKKIIIKNDPSLPEPACVKISALEGYRGQRVKV
FGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSVAVYGTLNLTPKGKQAPGGHEL
SCDFWELVGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSKILKARSMITRCFRDHFFDRGYCEVTT
PTLVQTQVEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRAEQSRTRRHLAEFTHVEA
ECPFLTFEDLLNRLEDLVCDVVDRVLKSPVASIVYELNPNFKPPKRPFRRMNYSDAIEWLKEHDVKKEDG
TFYEFGDDIPEAPERLMTDTINEPILLCRFPVEIKSFYMQRCPEDPRLTESVDVLMPNVGEIVGGSMRSW
DSEEILEGYKREGIDPAPYYWYTDQRKYGTCPHGGYGLGLERFLSWILNRYHIRDVCLYPRFLQRCRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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