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Report for CCDS89357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89357.1 Public Mus musculus 19 Trpm3 23 108 98 CCDS HistoryNCBI Gene:226025Re-query CCDS DB by CCDS ID:89357.1Re-query CCDS DB by GeneID:226025See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89357.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238066.1 ENSMUSP00000157646.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238066.1Link to Ensembl Protein Viewer:ENSMUSP00000157646.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238066Re-query CCDS DB by Protein ID:ENSMUSP00000157646
Original member Current member NCBI NM_001362506.1 NP_001349435.1 Accepted alive Link to Nucleotide Sequence:NM_001362506.1Link to Protein Sequence:NP_001349435.1Re-query CCDS DB by Nucleotide ID:NM_001362506Re-query CCDS DB by Protein ID:NP_001349435Link to BLAST:NP_001349435.1

Chromosomal Locations for CCDS 89357.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 22448283 22448459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22697422 22697501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22698729 22698933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22711712 22711925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22715229 22715353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22733000 22733171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22766634 22766808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22793331 22793454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22856678 22856750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22883884 22883984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22885348 22885428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22889394 22889444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22897670 22897810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22900134 22900163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22901046 22901335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22901988 22902216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22904635 22904802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22910035 22910175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22914431 22914559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22918603 22918854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22925896 22926070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22978292 22978442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22978556 22978755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22982583 22982715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 22986856 22988308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5070 nt):
ATGCCAGGGCCGTGGGGGACCGTTTATTTTCTAGGCACTGCCCAGATTTGCAGTTTCTTGTCTTCCCGGT
GGAATTTGGAAGGGGTCATGAATCAGACTGATGCTTCTCGACCCCTAAATTGGACCATCCGGAAGCTATG
CCACGCAGCCTTTCTCCCATCTGTCAGACTTCTCAAGGCTCAGAAATCCTGGATTGAAAGAGCATTTTAT
AAAAGAGAATGTGTTCACATCATACCGAGCACCAAAGACCCCCATAGGTGTTGCTGTGGACGCCTCATAG
GCCAGCATGTTGGACTCACTCCCAGTATCTCTGTGCTTCAGAATGAGAAAAATGAGAGTCGCCTCTCCCG
AAATGACATCCAGTCTGAGAAGTGGTCTATCAGCAAACACACTCAGCTCAGCCCAACAGACGCTTTTGGG
ACCATTGAGTTCCAAGGAGGTGGCCATTCCAACAAAGCTATGTATGTCCGAGTATCTTTTGATACGAAAC
CTGATCTCTTGCTACACCTGATGACCAAGGAATGGCAACTGGAGCTTCCCAAACTTCTCATCTCCGTGCA
CGGAGGGCTGCAGAACTTTGAACTCCAGCCCAAACTCAAGCAAGTCTTCGGGAAGGGGCTCATCAAAGCA
GCCATGACAACTGGAGCCTGGATCTTCACTGGAGGGGTCAACACAGGTGTCATTCGTCATGTTGGAGATG
CCTTGAAAGACCATGCATCTAAGTCTCGAGGGAAGATATGTACCATAGGTATCGCCCCCTGGGGAATTGT
GGAAAACCAGGAAGACCTGATTGGAAGAGATGTAGTCCGACCATACCAGACCATGTCCAATCCTATGAGC
AAGCTCACCGTTCTCAATAGCATGCACTCCCACTTCATCCTGGCTGACAATGGGACCACGGGGAAATACG
GAGCAGAGGTGAAACTCCGCAGACAACTGGAAAAGCACATTTCACTCCAGAAGATAAACACAAGAATCGG
TCAAGGGGTTCCAGTGGTGGCTCTCATCGTGGAAGGAGGACCCAATGTGATCTCAATTGTTTTGGAATAC
CTTCGAGACACCCCTCCTGTACCAGTCGTGGTCTGTGATGGGAGTGGACGGGCATCCGACATCCTGGCAT
TTGGGCATAAATATTCAGAAGAAGGCGGACTTATCAATGAATCTTTGAGGGACCAGCTGTTGGTGACAAT
ACAGAAGACCTTCACGTACACTCGAACCCAAGCTCAGCACCTGTTCATCATCCTCATGGAATGCATGAAG
AAGAAGGAACTGATCACAGTGTTTCGAATGGGGTCAGAAGGCCACCAGGACATTGATTTAGCTATCCTGA
CAGCATTACTCAAAGGTGCCAATGCATCCGCCCCAGACCAACTGAGCTTAGCTTTAGCCTGGAACAGAGT
TGACATCGCTCGCAGCCAGATCTTTATTTACGGGCAGCAGTGGCCGGTAGGGTCCCTGGAGCAAGCCATG
CTGGATGCCCTAGTCCTGGACAGAGTGGATTTTGTGAAATTACTCATAGAAAATGGAAGACATGGGCCCT
CAAATACATTGTACCACTTGGTCAGGGATGTCAAAAAGGGAAACCTGCCCCCGGACTACAGAATCAGCCT
GATAGACATTGGCCTGGTGATCGAGTACCTGATGGGCGGGGCTTACCGCTGCAACTACACGCGCAAGCGC
TTTCGGACCCTCTACCACAATCTCTTTGGCCCCAAAAGGCCCAAAGCCTTGAAACTGCTGGGAATGGAGG
ATGATATTCCCTTGAGGAGAGGACGGAAGACAACTAAGAAGCGTGAGGAAGAGGTGGACATCGACTTGGA
TGATCCTGAGATCAACCACTTTCCATTCCCCTTCCATGAGCTGATGGTGTGGGCCGTCCTCATGAAGAGA
CAAAAGATGGCCCTGTTCTTCTGGCAACACGGAGAGGAGGCCATGGCCAAAGCCCTGGTGGCCTGCAAGC
TCTGCAAGGCCATGGCTCACGAGGCTTCTGAGAATGACATGGTCGATGACATTTCCCAGGAGCTGAACCA
CAACTCCAGGGACTTTGGCCAGCTGGCTGTGGAGCTCCTGGACCAGTCCTACAAACAGGATGAGCAGCTG
GCCATGAAGCTGCTGACGTATGAGCTGAAGAACTGGAGTAATGCCACATGCCTGCAGCTGGCTGTGGCTG
CCAAGCACCGTGACTTCATTGCACACACGTGCAGCCAGATGTTACTTACTGACATGTGGATGGGACGGCT
CCGGATGAGAAAGAACTCAGGCCTCAAGGTAATTCTGGGAATTCTACTTCCTCCTTCAATTCTCAGCTTG
GAGTTCAAGAACAAAGATGACATGCCCTATATGACTCAGGCCCAGGAGATTCATCTCCAAGAGAAGGAGC
CGGAGGAGCCAGAGAAGCCCACAAAGGAAAAAGATGAAGAGGACATGGAGCTAACAGCAATGTTGGGGCG
AAGCAATGGGGAATCATCCAGAAAGAAAGATGAAGAAGAAGTTCAAAGCAGGCACCGGCTAATCCCCGTG
GGCCGAAAAATCTATGAGTTCTACAACGCACCCATCGTGAAGTTCTGGTTCTACACTCTGGCGTATATTG
GATACCTGATGCTCTTCAACTACATCGTGTTAGTGAAGATGGAGCGCTGGCCTTCCACTCAGGAATGGAT
TGTCATCTCCTACATTTTCACTCTGGGAATAGAGAAGATGAGAGAGATCCTGATGTCGGAGCCGGGCAAG
CTGCTGCAGAAGGTGAAGGTGTGGCTTCAGGAGTACTGGAACGTCACAGACCTCATCGCCATCCTTCTCT
TCTCGGTGGGAATGATCCTTCGTCTTCAAGATCAGCCCTTCAGGAGTGACGGGAGGGTCATCTACTGTGT
GAACATCATTTATTGGTATATCCGTTTGCTGGACATCTTCGGCGTGAACAAGTATCTGGGCCCATATGTG
ATGATGATTGGGAAAATGATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTGCTGATGAGCT
TTGGGGTCGCCAGGCAAGCCATTCTCTTTCCCAATGAGGAGCCATCTTGGAAACTGGCCAAGAATATCTT
CTACATGCCTTATTGGATGATTTATGGGGAAGTGTTTGCTGACCAGATAGACCCTCCCTGTGGACAGAAT
GAGACCCGAGAGGATGGCAAGACAATCCAGCTGCCCCCATGCAAGACAGGAGCATGGATTGTCCCGGCCA
TCATGGCCTGCTACCTCTTGGTGGCGAACATCCTTCTGGTCAACCTCCTTATTGCCGTCTTCAACAATAC
ATTTTTTGAGGTCAAGTCGATATCCAACCAAGTATGGAAATTTCAGAGGTACCAGCTCATCATGACTTTC
CACGAGAGGCCGGTTCTGCCCCCACCGCTCATCATCTTCAGTCACATGACCATGATCTTCCAGCATGTGT
GCTGCCGGTGGAGGAAGCATGAGAGTGACCAGGACGAAAGGGACTACGGCCTGAAACTCTTCATAACTGA
CGATGAGCTCAAGAAAGTACACGATTTTGAAGAGCAGTGCATAGAGGAATATTTCCGAGAGAAGGATGAT
CGCTTCAATTCGTCCAACGATGAGAGGATACGTGTTACATCAGAAAGGGTGGAGAACATGTCCATGAGGC
TGGAGGAAGTTAATGAGAGAGAACATTCCATGAAGGCTTCACTCCAGACCGTGGACATCCGGCTAGCACA
GCTAGAGGACCTCATCGGGCGCATGGCCACCGCCCTGGAGCGCCTGACTGGTCTGGAGCGGGCAGAGTCT
AACAAAATCCGCTCAAGGACCTCCTCAGACTGCACAGATGCAGCCTACATCGTCCGCCAGAGCAGCTTCA
ACAGCCAGGAAGGGAACACCTTCAAACTTCAAGAGAGTATAGACCCTGCAGGTGAGGAGACCATATCCCC
AACTTCTCCAACCTTAATGCCCCGTATGCGAAGCCATTCTTTCTATTCAGTCAATGTGAAAGACAAAGGT
GGGATAGAAAAGTTGGAAAGCATTTTCAAAGAAAGGTCCCTGAGCTTACACCGAGCTACTAGCTCCCACT
CAGTAGCCAAAGAACCCAAAGCTCCTGCAGCCCCTGCAAACACCTTGGCCATTGTTCCTGACTCCAGAAG
ACCATCATCTTGCATAGACATCTATGTCTCTGCCATGGACGAGCTCCACTGTGATATAGAGCCTCTGGAT
AATTCCATGAACATCCTTGGGCTGGGTGAGCCAAGCTTTTCAGCTCTAGCACCTTCCACAACCCCGTCAA
GTAGTGCCTATGCAACGCTCGCACCTACAGACCGACCTCCCAGTAGGAGCATTGATTTTGAAGACCTCAC
CTCCATGGACACTAGATCTTTTTCTTCAGACTATACACACCTCCCAGAATGCCAAAACCCCTGGGACACA
GACCCTCCAACGTACCATACCATCGAGCGTTCCAAGAGTAGCCGCTACCTAGCCACCACGCCCTTTCTTC
TGGAAGAGGCTCCCATTGTAAAATCCCATAGCTTTATGTTTTCTCCTTCAAGGAGCTACTACGCCAACTT
TGGGGTGCCCGTGAAAACGGCAGAATACACAAGTATTACAGACTGTATCGACACAAGATGTGTCAATGCC
CCCCAAGCAATAGCTGACCGAGCCACCTTCCCTGGAGGTCTCGGAGACAAAGTGGAAGATTTATCTTGTT
GCCACCCTGAGCGAGAAGCAGAGCTGAGCCATCCTAGCTCTGACAGTGAGGAAAATGAGGCCAGAGGCCA
GAGAGCTGCCAATCCGATATCCTCTCAGGAGGCTGAAAATGCAGACAGAACCCTATCCAACAACATCACA
GTTCCCAAGATAGAGCGCGCCAACAGCTACTCAGCAGAGGAGCCAAACGTGCCATATGCACATACCAGAA
AGAGCTTCTCCATCAGTGACAAGCTTGATAGACAGAGGAACACGGCGAGCCTCCGAAATCCCTTCCAGAG
AAGTAAGTCCTCCAAGCCGGAGGGCCGAGGGGACAGCCTATCCATGAGGAGACTGTCTAGAACATCGGCC
TTTCATAGCTTTGAAAGCAAGCACAACTAA

Translation (1689 aa):
MPGPWGTVYFLGTAQICSFLSSRWNLEGVMNQTDASRPLNWTIRKLCHAAFLPSVRLLKAQKSWIERAFY
KRECVHIIPSTKDPHRCCCGRLIGQHVGLTPSISVLQNEKNESRLSRNDIQSEKWSISKHTQLSPTDAFG
TIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLELPKLLISVHGGLQNFELQPKLKQVFGKGLIKA
AMTTGAWIFTGGVNTGVIRHVGDALKDHASKSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMS
KLTVLNSMHSHFILADNGTTGKYGAEVKLRRQLEKHISLQKINTRIGQGVPVVALIVEGGPNVISIVLEY
LRDTPPVPVVVCDGSGRASDILAFGHKYSEEGGLINESLRDQLLVTIQKTFTYTRTQAQHLFIILMECMK
KKELITVFRMGSEGHQDIDLAILTALLKGANASAPDQLSLALAWNRVDIARSQIFIYGQQWPVGSLEQAM
LDALVLDRVDFVKLLIENGRHGPSNTLYHLVRDVKKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKR
FRTLYHNLFGPKRPKALKLLGMEDDIPLRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKR
QKMALFFWQHGEEAMAKALVACKLCKAMAHEASENDMVDDISQELNHNSRDFGQLAVELLDQSYKQDEQL
AMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNSGLKVILGILLPPSILSL
EFKNKDDMPYMTQAQEIHLQEKEPEEPEKPTKEKDEEDMELTAMLGRSNGESSRKKDEEEVQSRHRLIPV
GRKIYEFYNAPIVKFWFYTLAYIGYLMLFNYIVLVKMERWPSTQEWIVISYIFTLGIEKMREILMSEPGK
LLQKVKVWLQEYWNVTDLIAILLFSVGMILRLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYV
MMIGKMMIDMMYFVIIMLVVLMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDPPCGQN
ETREDGKTIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTF
HERPVLPPPLIIFSHMTMIFQHVCCRWRKHESDQDERDYGLKLFITDDELKKVHDFEEQCIEEYFREKDD
RFNSSNDERIRVTSERVENMSMRLEEVNEREHSMKASLQTVDIRLAQLEDLIGRMATALERLTGLERAES
NKIRSRTSSDCTDAAYIVRQSSFNSQEGNTFKLQESIDPAGEETISPTSPTLMPRMRSHSFYSVNVKDKG
GIEKLESIFKERSLSLHRATSSHSVAKEPKAPAAPANTLAIVPDSRRPSSCIDIYVSAMDELHCDIEPLD
NSMNILGLGEPSFSALAPSTTPSSSAYATLAPTDRPPSRSIDFEDLTSMDTRSFSSDYTHLPECQNPWDT
DPPTYHTIERSKSSRYLATTPFLLEEAPIVKSHSFMFSPSRSYYANFGVPVKTAEYTSITDCIDTRCVNA
PQAIADRATFPGGLGDKVEDLSCCHPEREAELSHPSSDSEENEARGQRAANPISSQEAENADRTLSNNIT
VPKIERANSYSAEEPNVPYAHTRKSFSISDKLDRQRNTASLRNPFQRSKSSKPEGRGDSLSMRRLSRTSA
FHSFESKHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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