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Report for CCDS89434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89434.1 Public Mus musculus 2 Acbd5 23 108 98 CCDS HistoryNCBI Gene:74159Re-query CCDS DB by CCDS ID:89434.1Re-query CCDS DB by GeneID:74159See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228050.1 ENSMUSP00000154043.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228050.1Link to Ensembl Protein Viewer:ENSMUSP00000154043.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228050Re-query CCDS DB by Protein ID:ENSMUSP00000154043
Original member Current member NCBI NM_001355637.1 NP_001342566.1 Accepted alive Link to Nucleotide Sequence:NM_001355637.1Link to Protein Sequence:NP_001342566.1Re-query CCDS DB by Nucleotide ID:NM_001355637Re-query CCDS DB by Protein ID:NP_001342566Link to BLAST:NP_001342566.1

Chromosomal Locations for CCDS 89434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 23069270 23069284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23069451 23069619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23075490 23075610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23078144 23078216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23080339 23080453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23080668 23080700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23087485 23087619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23089591 23089788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23090476 23090582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23094289 23094517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23099562 23099764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23110245 23110286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23110654 23110763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23112505 23112517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGCTCTTCCTCGCGTTTCATGCAGGCTCTTGGGGAAGCTGGTGCTGCTGCTGCTGTGTGATTACCGCGG
AC
AGACCTTGGGACCGAGGCCGGCGCTGGCAGCTGGAGATGGCGGACACACCGTCAGTGTATGAAACCAG
A
TTTGAGGCGGCCGTGAAGGTGATCCAGAGTTTGCCGAAAAATGGATCATTCCAACCAACAAATGAAATG
ATG
CTTAAGTTCTATAGCTTCTACAAACAGGCAACTGAAGGACCCTGTAAACTTTCACGGCCTGGATTCT
GG
GATCCTATTGGAAGATATAAATGGGATGCTTGGAGTTCACTGGGTGATATGACTAAAGAAGAAGCCAT
G
ATTGCATATGTTGAAGAAATGAAAAAGATTATTGAAACCATGCCCATGACTGAGAAAGTGGAAGAGTTG
CTG
CATGTTATAGGTCCATTTTACGAGATTGTAGAAGACAAAAAGAGCAGCAAGAGTTCTGACTTGACCT
CA
GTCCGATTGGAGAAAATCTCTAAGTACCTAGAAGATCTTGGTAATGTTCTGACCTCTTCAAATGCCAA
A
GCTGTTAATGGTAAAGCAGAGAGCAGTGATAGTGGGGCTGAGTCTGAAGAAGAAGAGGCCCAAGAAGAG
TTA
AAAGGAGCAGAACAGAGCGGCAGTGATGATAAGAAAACGCTGAAGAAATCAGCAGATAAGAATTTGG
AA
ATCATTGTTACCAATGGCTATAAAGGTAGCTTTGTTCAGGATATACAGAGTGACATTCATACTGATTC
T
TCCCGGAGCACCAGAAGCAGTGAAGATGAAAAGCCTGGAGATGAGAGCTCTCAGCAGACAGGACACACC
ATT
GTCTGTGCTCACCAAGATAGAAATGAAGATCCCAGTGAAGATGCTTCAGGAATACACCATTTAACAA
GT
GATTCAGATAGTGAAGTGTACTGTGACTCTATGGAGCAATTTGGACAAGAAGAGTATTATTTAGGTGG
T
GATCCTACTCAGCACTTGGAAAGTTCTGGTTTTTGTGAAGATGCTCAGCAATCTCCTGGAAATGGCAGC
ATT
GGGAAAATGTGGATGGTAGCAGTCAAAGGAAAAGGCGAAGTGAAACACGGAGGAGAAGATGGCAGAA
GT
AGCAGTGGAGCACCGCACCGTGAGACGAGAGGTGGAGAGAGCGAGGACTTCTCCAGTGTCAGGAGAGG
G
AGAGTAGGGAATAGAATACCACATTTGAGCGAAGGACCCAAGGGTCGGCAAGTAGGAAGTGGAGGTGAT
GGA
GAACGCTGGGGCTCAGACCGGGGGTCCAGAGGCAGCCTCAATGAGCAGATCGCTCTTGTGCTCATTA
GA
TTGCAGGAGGACATGCAGAATGTCCTTCAGAGACTTCATAAACTGGAAACACTAACTGCTTCGCAGGC
G
AAATTATCTTTGCAGACAAGTAATCAGCCCTCCTCACAGAGACCAGCTTGGTGGCCCTTTGAGATGTCC
CCT
GGTGCATTAGCTTTTGCTATTATATGGCCTTTTATTGCTCAGTGGTTGGCACATTTGTATTATCAAA
GA
AGGAGAAGAAAACTAAATTGA


Translation (520 aa):
MLFLAFHAGSWGSWCCCCCVITADRPWDRGRRWQLEMADTPSVYETRFEAAVKVIQSLPKNGSFQPTNEM
M
LKFYSFYKQATEGPCKLSRPGFWDPIGRYK
WDAWSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVEEL
L
HVIGPFYEIVEDKKSSKSSDLTS
VRLEKISKYLEDLGNVLTSSNAKAVNGKAESSDSGAESEEEEAQEE
L
KGAEQSGSD
DKKTLKKSADKNLEIIVTNGYKGSFVQDIQSDIHTDSSRSTRSSEDEKPGDESSQQTGHT
I
VCAHQ
DRNEDPSEDASGIHHLTSDSDSEVYCDSMEQFGQEEYYLGGDPTQHLESSGFCEDAQQSPGNGS
I
GKMWMVAVKGKGEVKHGGEDGRSSSGAPHRETRGGESEDFSSVRRGR
VGNRIPHLSEGPKGRQVGSGGD
G
ERWGSDRGSRGSLNEQIALVLIRLQEDMQNVLQRLHKLETLTASQ
AKLSLQTSNQPSSQRPAWWPFEMS
P
GALAFAIIWPFIAQWLAHLYYQRRR
RKLN



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser