CCDS Report for Consensus CDS

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Report for CCDS89646.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
89646.1	Public	Mus musculus	3	Sh3d19	23	108	98

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89646.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000238545.1	ENSMUSP00000158832.1	Accepted	alive
		NCBI	NM_001374679.1	NP_001361608.1	Accepted	alive

Chromosomal Locations for CCDS 89646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)

Genome Browser links:

Chromosome	Start	Stop
3	86078969	86078984
3	86080395	86080437
3	86083227	86083365
3	86083502	86083655
3	86084368	86085357
3	86093690	86093797
3	86098147	86098259
3	86102890	86102951
3	86104083	86104347
3	86106970	86107038
3	86107212	86107352
3	86113106	86113178
3	86114787	86114917
3	86116819	86116877
3	86120530	86120732
3	86121134	86121186
3	86123146	86123332
3	86123686	86123783
3	86126595	86126711

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3021 nt):
ATGCCCCGCGGAAGAGCTTCTCGGACCTGTATTCAGAGTGAACTTCATCGGGACAGGAGGCGTCCAGAGA TCACCATCGTGGCAGCAGAGCCACTGAGGCCGGCCTCGTGGTTTCCAGGAGCTCCACCTCCAGGACTGGG ATTTCCCTCCACGCCTGGAGCAGGCCCTTGGAGACCCAATGACTTGGTTCCCGCTGAGCTCCCGCCATCC TATGAACAAGTGATAAAAGAAATCAACCAAGTCCAGGTCAATGCCACAAATAACAATAACGCTGCTGCCA CTCCAAGGAGCACTATCACCTCTGCGACGCAGACGGACTTTCCGGAGGACATAGACAGCGATCCTCCCCC AACACTACAGGCGCCTCTCAAGCCTCTCCAGCCGTCACCCGCAGCCTCAGCTGGTAACCTCCCCCCAGGT GTGGCACCTTTAATCGTCTTCGATATCTGTGAAGAGCAAACTTGTCCTGAAAACCCCAGTGCTACAAGAT GTCCAGTGCCAAGGCCAAGATCAAAAAGCAACCTCAGACCAGTAGCTAGGGATGCTAACAGTAAAGAGAA AAACAGCCAGAAAAGCCCAGTGACCCCCAGAGAAGACTGGCCACCCCACTGTCTACTGGACAGCACCTGC AATTTAGATAGCCAGGCAATGATGAACATTATGAACACAGAACAAAGCCAAAATACTATTGTTTCCAGGA TCAAAGCATTTGAGGGTCAGACGAACACAGAAATCCCAGGACTGCCCAAGAAACCCGAGATTATTCCCCG CACGATTCCCCCGAAGCCTGCTGTTTCCTCAGGGAAACCCTTAGTGGCACCCAAGCCAGCTGCTAACAGA GCTTCTGGGGAATGGGACACATGGGCCGAAAACAGGCTCAAGGTGACTTCCAGAGAAGGGCTCACGCCAT ACTCATCGCCACAAGAAGCCGGAATCACCCCAGTAACCAAACCTGAATTGCCAAAGAAACCAACTCCTGG CCTTACACGAAGCGTGAACCATGAGACTTCTGGAGGAAGACCCATGGCGGAGAGCCCCGATACGGGGAAG AAAATCCCAACTCCTGCTCCCCGGCCTTTGCTGCCGAAAAAATCAGCCTCCACAGATGCCCCACCGTACC CTTCGATTCCACCGAAACTGGTTTCTGCCCCGCCCCGACTCTCAGTAGCATCACAAGCCAAAGCGTTCCG GTCACTTGGAGAAGGGCTGCCATCCAATCCCCCAGTTCCAGCACCACAGAGCAAAGCCCTGGGGGACATC GACCTCATCAGCTTTGACGATGACGTATTGCCCACCTCGGGGAGCCCAGCTGAAGAACCCACAGGTTCTG AGACGGTTCTAGATCCCTTTCAGCTCCCCACAAAAACAGAAGCAACAAAAGAAAGAGCCGTTCAGCCGGC GCCCACCAGGAAGCCTACTGTAATACGAATCCCAGCCAAACCAGGAAAATGTTTACATGAGGAACCACAA AGCCCACCTCCTCTTCCTGCCGAAAAGCCAGTTGGGAATACTCACAGTGCAGTGTCTGGAAGGCCCAGTC ACTCTGACAGAACTAGAAACCCAGAACTGGAGCAAGCCAGCGAATCGGGAGGCTTGGTACAAGGACCCCC CAGGTTGCCACCAAGACCTGTACATGGAAAAGTCATTCCAGTTTGGAGGCCTCCCCCAAAAGGGGCCCCT GAGAGACCACCACCCCCTAAACTTCCTGCATCCAAATCATCAAATAAAAATCTGCCTTTTAACCGCTCCT CCTCTGACATGGATCTTCAGAAGAAGCAAAGCCACTTTGTATCTGGACTCTCAAAAGCCAAGAGTCAAAT CTTTAAAAACCAAGATCCGGTGCTACCCCCTCGTCCCAAACCGGGACACCCTCTCTACAGGAAATACATG CTGTCTGTGCCTCATGGAATTGCCAATGAAGACATTGTCTCCCGAAACCCCACGGAACTCTCTTGTAAGC GTGGGGATGTCCTTGTGATCCTGAAGCAGGCAGAAAATAATTACTTGGAATGCCAACGGGGAGAAGGCAC CGGCAGAGTCCACCCATCCCAGATGAAGATTGTCACTCCCCTGGACGAGCGCCCGAGAGGCAGACCTAAC GATTCAGGCCACAGTCAGAAGCCTGTAGACAGTGGTGCTCCTCACGCTGTGGCTCTTCATGATTTCCCAG CAGAGCAAGCTGACGATCTGAGTCTCACATCTGGAGAGATTGTTTATCTTCTCGAAAAAATAGATGCAGA GTGGTACAGAGGGAAATGTAGGAACCAGACTGGCGTGTTTCCTGCCAATTACGTCAAAGTCATTGTTGAT ATTCCAGAAGGAAGAAGTGGAAAAAGAGAATCCTTTTCATCTCACTGTGCTAAAGGCCCACGTTGTGTCG CACGGTTTGAGTATATTGGAGACCAGAAGGATGAGTTAAGTTTCTCAGAGGGAGAAGTCATTATTCTCAC AGAGTACGTGAATGAAGAATGGGGCAGAGGAGAGATTCGAGACCGGAGCGGGATCTTCCCCCTGAATTTT GTGGAGCTTGTTGGGGATCACCCCACATCTGGTGCAAATATTTTAAGTACAAAGGTGCCACCAAAGACCA AAAACGAAGACCCTGGCTCAAATTCTCAGGACAGCAGCCCTCCTGGAGAATGGTGCAAAGCTCTTCACAG TTTCACAGCAGAGACCAGCGAGGACTTACCCTTCAAACGCGGAGATCGGATCCTGATCCTTGAACGTCTA GATTCCGACTGGTACCGGGGCCGACTGCATGACAGGGAGGGCATCTTCCCAGCAGTGTTTGTGCAACCCT GCCCAGCTGAGGCAAAAGGTGTGGCTTCCGCAATACCGAAGGGGAGGAAGGTTAAAGCCCTGTATGATTT TCTTGGGGAGAACGAAGATGAGCTCTCTTTCAAGGCTGGAGACGTAATAACGGAGCTGGAGCCCATAGAT GATGCCTGGATGCGTGGAGAACTAATGGGAAGAGCTGGAATGTTTCCCAAAAACTACGTTCAGTTTCTAC AAGTCAGCTGA
Translation (1006 aa):
MPRGRASRTCIQSELHRDRRRPEITIVAAEPLRPASWFPGAPPPGLGFPSTPGAGPWRPNDLVPAELPPS YEQVIKEINQVQVNATNNNNAAATPRSTITSATQTDFPEDIDSDPPPTLQAPLKPLQPSPAASAGNLPPG VAPLIVFDICEEQTCPENPSATRCPVPRPRSKSNLRPVARDANSKEKNSQKSPVTPREDWPPHCLLDSTC NLDSQAMMNIMNTEQSQNTIVSRIKAFEGQTNTEIPGLPKKPEIIPRTIPPKPAVSSGKPLVAPKPAANR ASGEWDTWAENRLKVTSREGLTPYSSPQEAGITPVTKPELPKKPTPGLTRSVNHETSGGRPMAESPDTGK KIPTPAPRPLLPKKSASTDAPPYPSIPPKLVSAPPRLSVASQAKAFRSLGEGLPSNPPVPAPQSKALGDI DLISFDDDVLPTSGSPAEEPTGSETVLDPFQLPTKTEATKERAVQPAPTRKPTVIRIPAKPGKCLHEEPQ SPPPLPAEKPVGNTHSAVSGRPSHSDRTRNPELEQASESGGLVQGPPRLPPRPVHGKVIPVWRPPPKGAP ERPPPPKLPASKSSNKNLPFNRSSSDMDLQKKQSHFVSGLSKAKSQIFKNQDPVLPPRPKPGHPLYRKYM LSVPHGIANEDIVSRNPTELSCKRGDVLVILKQAENNYLECQRGEGTGRVHPSQMKIVTPLDERPRGRPN DSGHSQKPVDSGAPHAVALHDFPAEQADDLSLTSGEIVYLLEKIDAEWYRGKCRNQTGVFPANYVKVIVD IPEGRSGKRESFSSHCAKGPRCVARFEYIGDQKDELSFSEGEVIILTEYVNEEWGRGEIRDRSGIFPLNF VELVGDHPTSGANILSTKVPPKTKNEDPGSNSQDSSPPGEWCKALHSFTAETSEDLPFKRGDRILILERL DSDWYRGRLHDREGIFPAVFVQPCPAEAKGVASAIPKGRKVKALYDFLGENEDELSFKAGDVITELEPID DAWMRGELMGRAGMFPKNYVQFLQVS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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