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Report for CCDS89676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89676.1 Public Mus musculus 3 Gstm7 23 108 98 CCDS HistoryNCBI Gene:68312Re-query CCDS DB by CCDS ID:89676.1Re-query CCDS DB by GeneID:68312See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106688.7 ENSMUSP00000102299.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106688.7Link to Ensembl Protein Viewer:ENSMUSP00000102299.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106688Re-query CCDS DB by Protein ID:ENSMUSP00000102299
Original member NCBI NM_001356351.1 NP_001343280.1 Updated not alive Link to Nucleotide Sequence:NM_001356351.1Link to Protein Sequence:NP_001343280.1Re-query CCDS DB by Nucleotide ID:NM_001356351Re-query CCDS DB by Protein ID:NP_001343280
Current member NCBI NM_001356351.2 NP_001343280.1 Accepted alive Link to Nucleotide Sequence:NM_001356351.2Link to Protein Sequence:NP_001343280.1Re-query CCDS DB by Nucleotide ID:NM_001356351Re-query CCDS DB by Protein ID:NP_001343280Link to BLAST:NP_001343280.1

Chromosomal Locations for CCDS 89676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107926891 107926980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107928870 107928980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107929063 107929158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107930274 107930374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107930473 107930554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107930828 107930892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107931315 107931390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 107931534 107931557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGGAGGCATGCTCTTGCAGCTGTCTAGCCCATGCCATTCGCCTGTTCCTGGAATACACAGACTCAAGCT
ATGAGGAGAAGAGATACACCATGGGTGATGCTCCTGACTATGACCAAAGCCAGTGGCTGAATGAGAAATT
CAAGCTGGGCCTGGACTTTCCTAACCTGCCCTACTTGATCGATGGGTCACACAAGATCACGCAGAGCAAT
GCCATCCTGCGCTACCTTGGCCGCAAGCACAACCTGTGTGGGGAGACAGAGGAGGAAAGGATCCGTGTGG
ATATTCTGGAGAATCAGCTTATGGACAACCGCATGGTGCTGGCGAGGCTTTGCTACAACGCTGACTTTGA
GAAGCTGAAGCCAGGGTACCTGGAGCAACTCCCTGGAATGATGAGGCTTTACTCTGAGTTCCTGGGCAAG
CGGCCATGGTTCGCAGGGGACAAGATCACCTTTGTGGATTTCATTGCTTACGATGTGCTTGAGAGGAACC
AAGTGTTTGAGGCCAAGTGCCTGGATGCGTTCCCAAACCTGAAGGACTTCATAGCGCGCTTTGAGGGCCT
GAAGAAGATCTCCGACTACATGAAGACCAGTCGCTTCCTCCCAAGACCCATGTTCACAAAGATGGCAACT
TGGGGCAGCAATTAG

Translation (214 aa):
MEACSCSCLAHAIRLFLEYTDSSYEEKRYTMGDAPDYDQSQWLNEKFKLGLDFPNLPYLIDGSHKITQSN
AILRYLGRKHNLCGETEEERIRVDILENQLMDNRMVLARLCYNADFEKLKPGYLEQLPGMMRLYSEFLGK
RPWFAGDKITFVDFIAYDVLERNQVFEAKCLDAFPNLKDFIARFEGLKKISDYMKTSRFLPRPMFTKMAT
WGSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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