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Report for CCDS90030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90030.1 Public Mus musculus 6 Tspan12 23 108 98 CCDS HistoryNCBI Gene:269831Re-query CCDS DB by CCDS ID:90030.1Re-query CCDS DB by GeneID:269831See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120965.7 ENSMUSP00000113384.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120965.7Link to Ensembl Protein Viewer:ENSMUSP00000113384.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120965Re-query CCDS DB by Protein ID:ENSMUSP00000113384
Original member Current member NCBI NM_001363814.1 NP_001350743.1 Accepted alive Link to Nucleotide Sequence:NM_001363814.1Link to Protein Sequence:NP_001350743.1Re-query CCDS DB by Nucleotide ID:NM_001363814Re-query CCDS DB by Protein ID:NP_001350743Link to BLAST:NP_001350743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350743.1 257 Q8BKT6-2 257 100% 0 0

Chromosomal Locations for CCDS 90030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 21772631 21772936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21799879 21799986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21806239 21806313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21835388 21835523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21836413 21836495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 21851010 21851075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCCAGAGAAGATTCCGTGAAGTGTTTGCGCTGCTTGCTCTACGCCCTCAACCTGCTCTTTTGGTTAA
TGTCCATCAGTGTCTTGGCAGTTTCTGCTTGGATGAGGGACTACCTGAATAATGTTTTGACTTTAACTGC
AGAAACAAGGGTAGAAGAAGCGGTCATCTTAACTTACTTCCCCGTGGTTCACCCCGTCATGATTGCTGTC
TGCTGCTTCCTTATCATCGTGGGAATGCTGGGATACTGTGGAACGGTGAAAAGAAATCTGTTGCTTCTTG
CATGGTACTTCGGAACGTTACTCGTCATCTTCTGTGTAGAACTGGCTTGCGGTGTGTGGACATACGAGCA
GGAGGTTATGGTGCCAGTACAGTGGTCAGATATGGTTACTTTGAAAGCCAGAATGACAAATTACGGCTTA
CCGAGGTATAGATGGCTTACACACGCTTGGAATTATTTTCAGAGAGAGGGTTGTGGGAAGAAGATGTATT
CCTTTTTGAGAGGAACCAAACAATTGCAAGTTCTAAGGTTTCTGGGAATCTCCATTGGTGTGACACAAAT
CCTGGCCATGATTCTCACCATTACTCTGCTCTGGGCTCTGTATTATGATAGAAGGGAGCCTGGAACAGAC
CAAATGCTATCTCTGAAAAATGATACGTCTCAGCACTTGTCATGTCATTCTGTGGAACTGTTAAAACCAA
GTCTTTCAAGGATCTTTGAGCATACATCAATGGCAAACAGCTTCAATACACATTTTGAGATGGAAGAATT
ATGA

Translation (257 aa):
MAREDSVKCLRCLLYALNLLFWLMSISVLAVSAWMRDYLNNVLTLTAETRVEEAVILTYFPVVHPVMIAV
CCFLIIVGMLGYCGTVKRNLLLLAWYFGTLLVIFCVELACGVWTYEQEVMVPVQWSDMVTLKARMTNYGL
PRYRWLTHAWNYFQREGCGKKMYSFLRGTKQLQVLRFLGISIGVTQILAMILTITLLWALYYDRREPGTD
QMLSLKNDTSQHLSCHSVELLKPSLSRIFEHTSMANSFNTHFEMEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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