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Report for CCDS90535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90535.1 Public Mus musculus 9 Or10d5j 23 108 98 CCDS HistoryNCBI Gene:258364Re-query CCDS DB by CCDS ID:90535.1Re-query CCDS DB by GeneID:258364See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000213171.1 ENSMUSP00000150077.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213171.1Link to Ensembl Protein Viewer:ENSMUSP00000150077.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213171Re-query CCDS DB by Protein ID:ENSMUSP00000150077
Original member Current member EBI ENSMUST00000217630.1 ENSMUSP00000150494.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217630.1Link to Ensembl Protein Viewer:ENSMUSP00000150494.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217630Re-query CCDS DB by Protein ID:ENSMUSP00000150494
Original member Current member EBI ENSMUST00000217360.1 ENSMUSP00000151213.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217360.1Link to Ensembl Protein Viewer:ENSMUSP00000151213.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217360Re-query CCDS DB by Protein ID:ENSMUSP00000151213
Original member Current member NCBI NM_001360353.1 NP_001347282.1 Accepted alive Link to Nucleotide Sequence:NM_001360353.1Link to Protein Sequence:NP_001347282.1Re-query CCDS DB by Nucleotide ID:NM_001360353Re-query CCDS DB by Protein ID:NP_001347282Link to BLAST:NP_001347282.1

Chromosomal Locations for CCDS 90535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39955989 39956933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGAGCATGAGGAACCACACCTCTGTGACAGAGTTCATCCTGCTGGGAATTTCCAACACTGAAGGACTAG
AGAGCATGCTGTTTGCCTTGTTCCTGGTCTTTTATGTCTTTGCCTTGTTGGGAAACCTGCTCATCTTCCT
CACCATCCTGGCTTCTCCCAACCTCCACACCCCCATGTATTTCTTCCTGGGGAACCTGGCAGTGTTTGAC
ATATTCTTCCCTTCTGTGAATTCTCCTAAGATGATGGACTACCTAGTACGGCAAGGCCGAACCATCTCAT
ACCAGGGTTGTGCCTCACAGATTTTCTTCTATCACACCCTGGGCTGTACTGAGTGCTTCCTGTATACAGT
GATGGCTTATGACCGCTTTGTGGCTATTTGTTACCCTATGAGATATACGGTCATCATGAACCCCAGGGTG
TGTACCTGCTTTACAGTGGGCACTTGGCTGGGGGGCTTTGTCCATGGGAGCATCCTCACATTTCTTATCT
TTAAGTTACCCTACTGTGGCCCCAATGAGGTAGACAGTTTCTTCTGTGACATTCCTGTGGTGCTGTCCCT
GGCATGTGCAGACACCTCCCTAGCGCAGACTGTGAGTTTTACTAATGTTGGCGTTGTTGCGCTCACATGT
TTTCTCCTTGTTCTCACTTCTTACACTCGTATTGTTATCTCCATCCTGAAAATCCGTTCCTCAGAAGGAA
GGCGCAGAGCCTTCTCGACCTGCAGTGCCCACTTCACATCCATTCTGTTGTTCTATGGTCCCGTGATTCT
CGTGTATCTCAGACCTGCTTCTAGTCCCTGGCTGGATTCTGTTGTCCAGGTGTTTAATAATGTTGTCACC
CCTTCCTTGAATCCTCTGATTTATTCTTTGAGAAACAAGGAAGTGAAATTAGCCCTGAGAAAGATGTTAA
GTCAAGCAATGCAACCTTTGGGGTATAAGGAATAG

Translation (314 aa):
MSMRNHTSVTEFILLGISNTEGLESMLFALFLVFYVFALLGNLLIFLTILASPNLHTPMYFFLGNLAVFD
IFFPSVNSPKMMDYLVRQGRTISYQGCASQIFFYHTLGCTECFLYTVMAYDRFVAICYPMRYTVIMNPRV
CTCFTVGTWLGGFVHGSILTFLIFKLPYCGPNEVDSFFCDIPVVLSLACADTSLAQTVSFTNVGVVALTC
FLLVLTSYTRIVISILKIRSSEGRRRAFSTCSAHFTSILLFYGPVILVYLRPASSPWLDSVVQVFNNVVT
PSLNPLIYSLRNKEVKLALRKMLSQAMQPLGYKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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