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Report for CCDS90638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90638.1 Public Mus musculus 9 Mthfsl 23 108 98 CCDS HistoryNCBI Gene:100039707Re-query CCDS DB by CCDS ID:90638.1Re-query CCDS DB by GeneID:100039707See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186863.6 ENSMUSP00000150907.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186863.6Link to Ensembl Protein Viewer:ENSMUSP00000150907.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186863Re-query CCDS DB by Protein ID:ENSMUSP00000150907
Original member Current member NCBI NM_001359992.1 NP_001346921.1 Accepted alive Link to Nucleotide Sequence:NM_001359992.1Link to Protein Sequence:NP_001346921.1Re-query CCDS DB by Nucleotide ID:NM_001359992Re-query CCDS DB by Protein ID:NP_001346921Link to BLAST:NP_001346921.1

Chromosomal Locations for CCDS 90638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 88688753 88688985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88715488 88715695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGCAAGATGAAGTTGAGACGGAAGTAATCATCAAGGACATTTTCAAACAAGGCAAAATCTGCTTCATCC
CTCAGTACCAATTCCAGAGCAATCACATGGACATGGTGAGGTTAACGTCACCTGAAGAAATTGCTTTACT
TCCCAAGACATCTTGGAATATTCATCAGCCTGGTGAGGGAGATGTTCGGGAGGAGGCCTTATCCACTGGT
GGACTTGACCTCATCTTCCTTCCTGGCCTCGGGTTTGACAAAGATGGCAACCGGCTGGGGCGGGGTAAGG
GGTACTATGACACCTACCTGAAGCGCTGTGTACAGCATCAGGAAGTGAAGCCCTACACCATGGCTTTGGC
TTTTAAAGAGCAGATCTGTCCCCAGATCCCAGTGGATGAGCATGACATGAAGGTAGATGAAGTCCTTTAT
GAAGATTCCCCAGCATCCTAA

Translation (146 aa):
MQDEVETEVIIKDIFKQGKICFIPQYQFQSNHMDMVRLTSPEEIALLPKTSWNIHQPGEGDVREEALSTG
GLDLIFLPGLGFDKDGNRLGRGKGYYDTYLKRCVQHQEVKPYTMALAFKEQICPQIPVDEHDMKVDEVLY
EDSPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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