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Report for CCDS90771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90771.1 Public Mus musculus X Phka2 23 108 98 CCDS HistoryNCBI Gene:110094Re-query CCDS DB by CCDS ID:90771.1Re-query CCDS DB by GeneID:110094See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 90771.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112376.1 ENSMUSP00000107995.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112376.1Link to Ensembl Protein Viewer:ENSMUSP00000107995.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112376Re-query CCDS DB by Protein ID:ENSMUSP00000107995
Original member Current member NCBI NM_001358968.1 NP_001345897.1 Accepted alive Link to Nucleotide Sequence:NM_001358968.1Link to Protein Sequence:NP_001345897.1Re-query CCDS DB by Nucleotide ID:NM_001358968Re-query CCDS DB by Protein ID:NP_001345897Link to BLAST:NP_001345897.1

Chromosomal Locations for CCDS 90771.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 160502827 160502904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160523272 160523430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160527730 160527777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160528847 160529015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160529915 160529997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160531108 160531188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160532979 160533077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160541369 160541515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160543634 160543687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160544212 160544334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160549175 160549270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160552713 160552820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160554301 160554379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160557686 160557820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160558467 160558621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGCGGAGCAGGAGCAATTCTGGGGTCCGCCTGGACGGGTACGCGAGGCTGGTGCAGCAAACCATCCTGT
GTTACCAGAACCCAGTCACTGGGCTGTTATCAGCCAGCCATGACCAGAAGGATGCCTGGGTACGGGACAA
TATCTATAGCATATTGGCTGTTTGGGGCCTGGGCATGGCCTACCGCAAGAATGCTGACCGTGATGAGGAT
AAAGCCAAGGCCTATGAGTTGGAACAGAACGTAGTGAAGCTGATGCGAGGTCTTCTCCAGTGTATGATGA
GGCAGGTGGACAAAGTGGAGAAGTTCAAGCACACTCAGAGTACCAAGGACAGTCTACATGCCAAGTACAA
CACTGCCACATGTAGCACTGTGGTGGGTGATGACCAGTGGGGCCACCTCCAGGTGGATGCCACCTCTCTC
TTCCTCCTGTTCCTGGCCCAGATGACAGCCTCAGGTTTGCGTATTATTTTTACCCTTGACGAAGTGGCCT
TCATACAGAATCTTGTCTTCTACATAGAAGCTGCATATAAAGTTGCTGATTATGGGATGTGGGAGCGTGG
AGATAAAACCAATCAGGGCATTCCGGAACTGAATGCAAGCTCGGTGGGAGTGGCCAAGGCAGCACTTGAG
GCCATTGATGAACTAGATCTTTTTGGAGCCCATGGAGGACGCAAATCGGTGATCCACGTCCTACCTGATG
AAGTTGAGCACTGCCAGTCAATTCTTTTCTCCATGTTGCCAAGAGCATCAACATCTAAAGAAATCGATGC
TGGACTTCTTTCTATTATTTCTTTCCCGGCCTTTGCAGTAGAAGATGTGAACCTTGTGAATGTGACCAAA
AATGAAATTATTTCCAAGCTTCAGGGGCGGTATGGATGCTGTCGCTTCCTTCGAGATGGCTATAAAACCC
CAAGAGAGGATCCACACCGATTGCATTATGACCCTGCCGAACTTAAGCTCTTTGAAAACATTGAATGTGA
ATGGCCTGTGTTCTGGACTTATTTAATCATAGATGGAATCTTCAATGGTGATGCTGTTCAGGTCCAAGAA
TACCGAGAAGCCTTGGAGGGAATATTAATCAGAGGCAAAGATGGGATCCACTTGGTGCCAGAACTCTATG
CCATCCCACCAGACAAGGTGGATGAAGAGTATAAGAATCCACACACAGTAGACCGAGTTCCACTGGGAAA
GCTGCCCCATCTTTGGGGACAGTCCTTGTACATCCTCAGCTCACTGCTAGCAGAGGGATTCCTTGCCACG
GGTGAAATCGATCCCTTAAATAGAAGATTTTCTACTTCAGTCAAACCTGATGTTGTAGTGCAAGTTGCTG
TTTTGGCAGAAAACAGTCACATTAAGGGGCTGTTGAAGGAGCATGGAATGACTGTCCAGAGCATTGCTGA
TGTGCATCCGATTCGAGTCCAGCCAGGCCGAATTCTTAGTCACATATATGCCAAACTTGGACGAAATAAG
AATATGAAATTGAGTGGTCGACCGTATCGGCACATTGGTGTCCTTGGCACCTCTAAACTCTATGTGATTA
GGAATCACATCTTCACTTTTACACCCCAGGTAAAAAGAACAGGCATGGGGGCCCGTGCTAGTGCATGCCT
TTAA

Translation (537 aa):
MRSRSNSGVRLDGYARLVQQTILCYQNPVTGLLSASHDQKDAWVRDNIYSILAVWGLGMAYRKNADRDED
KAKAYELEQNVVKLMRGLLQCMMRQVDKVEKFKHTQSTKDSLHAKYNTATCSTVVGDDQWGHLQVDATSL
FLLFLAQMTASGLRIIFTLDEVAFIQNLVFYIEAAYKVADYGMWERGDKTNQGIPELNASSVGVAKAALE
AIDELDLFGAHGGRKSVIHVLPDEVEHCQSILFSMLPRASTSKEIDAGLLSIISFPAFAVEDVNLVNVTK
NEIISKLQGRYGCCRFLRDGYKTPREDPHRLHYDPAELKLFENIECEWPVFWTYLIIDGIFNGDAVQVQE
YREALEGILIRGKDGIHLVPELYAIPPDKVDEEYKNPHTVDRVPLGKLPHLWGQSLYILSSLLAEGFLAT
GEIDPLNRRFSTSVKPDVVVQVAVLAENSHIKGLLKEHGMTVQSIADVHPIRVQPGRILSHIYAKLGRNK
NMKLSGRPYRHIGVLGTSKLYVIRNHIFTFTPQVKRTGMGARASACL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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