NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9166.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9166.1 Public Homo sapiens 12 RITA1 24 110 108 CCDS HistoryNCBI Gene:84934Re-query CCDS DB by CCDS ID:9166.1Re-query CCDS DB by GeneID:84934See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9166.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000549621.5 ENSP00000448289.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000549621.5Link to Ensembl Protein Viewer:ENSP00000448289.1Re-query CCDS DB by Nucleotide ID:ENST00000549621Re-query CCDS DB by Protein ID:ENSP00000448289
Original member Current member EBI ENST00000548278.2 ENSP00000449841.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000548278.2Link to Ensembl Protein Viewer:ENSP00000449841.1Re-query CCDS DB by Nucleotide ID:ENST00000548278Re-query CCDS DB by Protein ID:ENSP00000449841
Original member Current member NCBI NM_032848.3 NP_116237.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032848.3Link to Protein Sequence:NP_116237.1Re-query CCDS DB by Nucleotide ID:NM_032848Re-query CCDS DB by Protein ID:NP_116237Link to BLAST:NP_116237.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116237.1 269 Q96K30-1 269 100% 0 0

Chromosomal Locations for CCDS 9166.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113186747 113187048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113191310 113191817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGAAGACCCCCGTGGAGCTGGCCGTCAGTGGGATGCAGACCCTCGGCCTTCAGCACCGCTGCCGAGGTG
GCTACCGGGTCAAGGCCAGGACGTCATATGTGGATGAGACTCTGTTTGGCAGCCCAGCAGGCACCCGGCC
TACCCCACCGGACTTCGATCCGCCCTGGGTGGAGAAGGCTAACAGAACCAGAGGCGTGGGCAAGGAGGCA
TCGAAGGCCTTGGGGGCAAAGGGGAGCTGTGAGACCACCCCCTCAAGGGGCAGCACCCCCACCCTCACAC
CAAGGAAGAAGAACAAATACAGACCCATCAGCCACACCCCGTCTTACTGTGATGAGTCGCTGTTTGGCTC
CCGATCTGAAGGCGCCAGCTTCGGGGCCCCGCGGATGGCGAAGGGGGATGCCGCAAAGCTCCGTGCTCTC
TTGTGGACGCCACCACCTACCCCCAGGGGTAGCCACTCGCCCCGCCCCAGGGAGGCACCACTGCGAGCCA
TTCACCCAGCTGGTCCCTCCAAGACAGAGCCGGGGCCAGCGGCAGACTCCCAGAAGTTATCTATGGGTGG
GTTACACTCTTCACGCCCCCTGAAGCGGGGACTTTCCCATTCCCTCACCCACCTGAATGTCCCCAGCACT
GGTCATCCAGCCACCAGTGCCCCCCACACAAATGGGCCTCAGGATCTCAGGCCTTCCACGTCAGGGGTGA
CCTTCCGGAGCCCCCTGGTGACTTCCAGGGCTCGCTCAGTTAGCATTTCAGTGCCATCTACCCCACGACG
AGGTGGGGCCACCCAGAAACCAAAGCCCCCTTGGAAATGA

Translation (269 aa):
MKTPVELAVSGMQTLGLQHRCRGGYRVKARTSYVDETLFGSPAGTRPTPPDFDPPWVEKANRTRGVGKEA
SKALGAKGSCETTPSRGSTPTLTPRKKNKYRPISHTPSYCDESLFGSRSEGASFGAPRMAKGDAAKLRAL
LWTPPPTPRGSHSPRPREAPLRAIHPAGPSKTEPGPAADSQKLSMGGLHSSRPLKRGLSHSLTHLNVPST
GHPATSAPHTNGPQDLRPSTSGVTFRSPLVTSRARSVSISVPSTPRRGGATQKPKPPWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH