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Report for CCDS9307.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9307.1 Public Homo sapiens 13 PARP4 24 110 108 CCDS HistoryNCBI Gene:143Re-query CCDS DB by CCDS ID:9307.1Re-query CCDS DB by GeneID:143See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9307.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381989.4 ENSP00000371419.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381989.4Link to Ensembl Protein Viewer:ENSP00000371419.3Re-query CCDS DB by Nucleotide ID:ENST00000381989Re-query CCDS DB by Protein ID:ENSP00000371419
Original member Current member NCBI NM_006437.4 NP_006428.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006437.4Link to Protein Sequence:NP_006428.2Re-query CCDS DB by Nucleotide ID:NM_006437Re-query CCDS DB by Protein ID:NP_006428Link to BLAST:NP_006428.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006428.2 1724 Q9UKK3 1724 100% 0 0

Chromosomal Locations for CCDS 9307.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24421119 24421314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24426466 24426598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24431377 24431476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24434395 24435474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24441846 24441968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24442590 24442685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24443650 24443730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24446681 24446761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24447016 24447186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24449718 24449817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24452406 24452593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24453587 24453654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24455017 24455212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24456341 24456478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24459044 24459122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24459264 24459310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24459972 24460136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24469024 24469110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24469894 24470025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24475472 24475596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24477701 24477857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24478093 24478276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24484653 24484748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24486168 24486305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24490668 24490828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24492421 24492594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24493596 24493733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24494573 24494722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24498116 24498229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24499301 24499376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24500316 24500382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24501633 24501834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24503645 24503776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5175 nt):
ATGGTGATGGGAATCTTTGCAAATTGTATCTTCTGTTTGAAAGTGAAGTACTTACCTCAGCAGCAGAAGA
AAAAGCTACAAACTGACATTAAGGAAAATGGCGGAAAGTTTTCCTTTTCGTTAAATCCTCAGTGCACACA
TATAATCTTAGATAATGCTGATGTTCTGAGTCAGTACCAACTGAATTCTATCCAAAAGAACCACGTTCAT
ATTGCAAACCCAGATTTTATATGGAAATCTATCAGGGAAAAGAGACTCTTGGATGTAAAGAATTATGATC
CTTATAAGCCCCTGGACATCACACCACCTCCTGATCAGAAGGCGAGCAGTTCTGAAGTGAAAACAGAAGG
TCTATGCCCGGACAGTGCCACAGAGGAGGAAGACACTGTGGAACTCACTGAGTTTGGTATGCAGAATGTT
GAAATTCCTCATCTTCCTCAAGATTTTGAAGTTGCAAAATATAACACCTTGGAGAAAGTGGGAATGGAGG
GAGGCCAGGAAGCTGTGGTGGTGGAGCTTCAGTGTTCGCGGGACTCCAGGGACTGTCCTTTCCTGATATC
CTCACACTTCCTCCTGGATGATGGCATGGAGACTAGAAGACAGTTTGCTATAAAGAAAACCTCTGAAGAT
GCAAGTGAATACTTTGAAAATTACATTGAAGAACTGAAGAAACAAGGATTTCTACTAAGAGAACATTTCA
CACCTGAAGCAACCCAATTAGCATCTGAACAATTGCAAGCATTGCTTTTGGAGGAAGTCATGAATTCAAG
CACTCTGAGCCAAGAGGTGAGCGATTTAGTAGAGATGATTTGGGCAGAGGCCCTGGGCCACCTGGAACAC
ATGCTTCTCAAGCCAGTGAACAGGATTAGCCTCAACGATGTGAGCAAGGCAGAGGGGATTCTCCTTCTAG
TAAAGGCAGCACTGAAAAATGGAGAAACAGCAGAGCAATTGCAAAAGATGATGACAGAGTTTTACAGACT
GATACCTCACAAAGGCACAATGCCCAAAGAAGTGAACCTGGGACTATTGGCTAAGAAAGCAGACCTCTGC
CAGCTAATAAGAGACATGGTTAATGTCTGTGAAACTAATTTGTCCAAACCCAACCCACCATCCCTGGCCA
AATACCGAGCTTTGAGGTGCAAAATTGAGCATGTTGAACAGAATACTGAAGAATTTCTCAGGGTTAGAAA
AGAGGTTTTGCAGAATCATCACAGTAAGAGCCCAGTGGATGTCTTGCAGATATTTAGAGTTGGCAGAGTG
AATGAAACCACAGAGTTTTTGAGCAAACTTGGTAATGTGAGGCCCTTGTTGCATGGTTCTCCTGTACAAA
ACATCGTGGGAATCTTGTGTCGAGGGTTGCTTTTACCCAAAGTAGTGGAAGATCGTGGTGTGCAAAGAAC
AGACGTCGGAAACCTTGGAAGTGGGATTTATTTCAGTGATTCGCTCAGTACAAGTATCAAGTACTCACAC
CCGGGAGAGACAGATGGCACCAGACTCCTGCTCATTTGTGACGTAGCCCTCGGAAAGTGTATGGACTTAC
ATGAGAAGGACTTTTCCTTAACTGAAGCACCACCAGGCTACGACAGTGTGCATGGAGTTTCGCAAACAGC
CTCTGTCACCACAGACTTTGAGGATGATGAATTTGTTGTCTATAAAACCAATCAGGTTAAAATGAAATAT
ATTATTAAATTTTCCATGCCTGGAGATCAGATAAAGGACTTTCATCCTAGTGATCATACTGAATTAGAGG
AATACAGACCTGAGTTTTCAAATTTTTCAAAGGTTGAAGATTACCAGTTACCAGATGCCAAAACTTCCAG
CAGCACCAAGGCCGGCCTCCAGGATGCCTCTGGGAACTTGGTTCCTCTGGAGGATGTCCACATCAAAGGG
AGAATCATAGACACTGTAGCCCAGGTCATTGTTTTTCAGACATACACAAATAAAAGTCACGTGCCCATTG
AGGCAAAATATATCTTTCCTTTGGATGACAAGGCCGCTGTGTGTGGCTTCGAAGCCTTCATCAATGGGAA
GCACATAGTTGGAGAGATTAAAGAGAAGGAAGAAGCCCAGCAAGAGTACCTAGAAGCCGTGACCCAGGGC
CATGGCGCTTACCTGATGAGTCAGGATGCTCCGGACGTTTTTACTGTAAGTGTTGGAAACTTACCCCCTA
AGGCTAAGGTTCTTATAAAAATTACCTACATCACAGAACTCAGCATCCTGGGCACTGTTGGTGTCTTTTT
CATGCCCGCCACCGTAGCACCCTGGCAACAGGACAAGGCTTTGAATGAAAACCTTCAGGATACAGTAGAG
AAGATTTGTATAAAAGAAATAGGAACAAAGCAAAGCTTCTCTTTGACTATGTCTATTGAGATGCCGTATG
TGATTGAATTCATTTTCAGTGATACACATGAACTGAAACAAAAGCGCACAGACTGCAAAGCTGTCATTAG
CACCATGGAAGGCAGCTCCTTAGACAGCAGTGGATTTTCTCTCCACATCGGTTTGTCTGCTGCCTATCTC
CCAAGAATGTGGGTTGAAAAACATCCAGAAAAAGAAAGCGAGGCTTGCATGCTTGTCTTTCAACCCGATC
TCGATGTCGACCTCCCTGACCTAGCCAGTGAGAGCGAAGTGATTATTTGTCTTGACTGCTCCAGTTCCAT
GGAGGGTGTGACATTCTTGCAAGCCAAGCAAATCGCCTTGCATGCGCTGTCCTTGGTGGGTGAGAAGCAG
AAAGTAAATATTATCCAGTTCGGCACAGGTTACAAGGAGCTATTTTCGTATCCTAAGCATATCACAAGCA
ATACCATGGCAGCAGAGTTCATCATGTCTGCCACACCTACCATGGGGAACACAGACTTCTGGAAAACACT
CCGATATCTTAGCTTATTGTACCCTGCTCGAGGGTCACGGAACATCCTCCTGGTGTCTGATGGGCACCTC
CAGGATGAGAGCCTGACATTACAGCTCGTGAAGAGGAGCCGCCCGCACACCAGGTTATTCGCCTGCGGTA
TCGGTTCTACAGCAAATCGTCACGTCTTAAGGATTTTGTCCCAGTGTGGTGCCGGAGTATTTGAATATTT
TAATGCAAAATCCAAGCATAGTTGGAGAAAACAGATAGAAGACCAAATGACCAGGCTATGTTCTCCGAGT
TGCCACTCTGTCTCCGTCAAATGGCAGCAACTCAATCCAGATGTGCCCGAGGCCCTGCAGGCCCCAGCCC
AGGTGCCGTCCTTGTTTCTCAATGATCGACTCCTTGTCTATGGATTCATTCCTCACTGCACACAGGCAAC
TCTGTGTGCACTAATTCAAGAGAAAGAATTTCGTACAATGGTGTCGACTACTGAGCTTCAGAAGACAACT
GGAACTATGATCCACAAGCTGGCAGCCCGAGCTCTAATCAGAGATTATGAAGATGGCATTCTTCACGAAA
ATGAAACCAGTCATGAGATGAAAAAACAAACCTTGAAATCTCTGATTATTAAACTCAGTAAAGAAAACTC
TCTCATAACACAATTTACAAGCTTTGTGGCAGTTGAGAAAAGGGATGAGAATGAGTCGCCTTTTCCTGAT
ATTCCAAAAGTTTCTGAACTTATTGCCAAAGAAGATGTAGACTTCCTGCCCTACATGAGCTGGCAGGGGG
AGCCCCAAGAAGCCGTCAGGAACCAGTCTCTTTTAGCATCCTCTGAGTGGCCAGAATTACGTTTATCCAA
ACGAAAACATAGGAAAATTCCATTTTCCAAAAGAAAAATGGAATTATCTCAGCCAGAAGTTTCTGAAGAT
TTTGAAGAGGATGGCTTAGGTGTACTACCAGCTTTCACATCAAATTTGGAACGTGGAGGTGTGGAAAAGC
TATTGGATTTAAGTTGGACAGAGTCATGTAAACCAACAGCAACTGAACCACTATTTAAGAAAGTCAGTCC
ATGGGAAACATCTACTTCTAGCTTTTTTCCTATTTTGGCTCCGGCCGTTGGTTCCTATCTTCCCCCGACT
GCCCGCGCTCACAGTCCTGCTTCCTTGTCTTTTGCCTCATATCGTCAGGTAGCTAGTTTCGGTTCAGCTG
CTCCTCCCAGACAGTTTGATGCATCTCAATTCAGCCAAGGCCCTGTGCCTGGCACTTGTGCTGACTGGAT
CCCACAGTCGGCGTCTTGTCCCACAGGACCTCCCCAGAACCCACCTTCTTCACCCTATTGTGGCATTGTT
TTTTCAGGGAGCTCATTAAGCTCTGCACAGTCTGCTCCACTGCAACATCCTGGAGGCTTTACTACCAGGC
CTTCTGCTGGCACCTTCCCTGAGCTGGATTCTCCCCAGCTTCATTTCTCTCTTCCTACAGACCCTGATCC
CATCAGAGGTTTTGGGTCTTATCATCCCTCTGCTTCCTCTCCTTTTCATTTTCAACCTTCCGCAGCCTCT
TTGACTGCCAACCTTAGGCTGCCAATGGCCTCTGCTTTACCTGAGGCTCTTTGCAGTCAGTCCCGGACTA
CCCCAGTAGATCTCTGTCTTCTAGAAGAATCAGTAGGCAGTCTCGAAGGAAGTCGATGTCCTGTCTTTGC
TTTTCAAAGTTCTGACACAGAAAGTGATGAGCTATCAGAAGTACTTCAAGACAGCTGCTTTTTACAAATA
AAATGTGATACAAAAGATGACAGTATCCTGTGCTTTCTGGAAGTAAAAGAAGAGGATGAAATAGTGTGCA
TACAACACTGGCAGGATGCTGTGCCTTGGACAGAACTCCTCAGTCTACAGACAGAGGATGGCTTCTGGAA
ACTTACACCAGAACTGGGACTTATATTAAATCTTAATACAAATGGTTTGCACAGCTTTCTTAAACAAAAA
GGCATTCAATCTCTAGGTGTAAAAGGAAGAGAATGTCTCCTGGACCTAATTGCCACAATGCTGGTACTAC
AGTTTATTCGCACCAGGTTGGAAAAAGAGGGAATAGTGTTCAAATCACTGATGAAAATGGATGACGCTTC
TATTTCCAGGAATATTCCCTGGGCTTTTGAGGCAATAAAGCAAGCAAGTGAATGGGTAAGAAGAACTGAA
GGACAGTACCCATCTATCTGCCCACGGCTTGAACTGGGGAACGACTGGGACTCTGCCACCAAGCAGTTGC
TGGGACTCCAGCCCATAAGCACTGTGTCCCCTCTTCATAGAGTCCTCCATTACAGTCAAGGCTAA

Translation (1724 aa):
MVMGIFANCIFCLKVKYLPQQQKKKLQTDIKENGGKFSFSLNPQCTHIILDNADVLSQYQLNSIQKNHVH
IANPDFIWKSIREKRLLDVKNYDPYKPLDITPPPDQKASSSEVKTEGLCPDSATEEEDTVELTEFGMQNV
EIPHLPQDFEVAKYNTLEKVGMEGGQEAVVVELQCSRDSRDCPFLISSHFLLDDGMETRRQFAIKKTSED
ASEYFENYIEELKKQGFLLREHFTPEATQLASEQLQALLLEEVMNSSTLSQEVSDLVEMIWAEALGHLEH
MLLKPVNRISLNDVSKAEGILLLVKAALKNGETAEQLQKMMTEFYRLIPHKGTMPKEVNLGLLAKKADLC
QLIRDMVNVCETNLSKPNPPSLAKYRALRCKIEHVEQNTEEFLRVRKEVLQNHHSKSPVDVLQIFRVGRV
NETTEFLSKLGNVRPLLHGSPVQNIVGILCRGLLLPKVVEDRGVQRTDVGNLGSGIYFSDSLSTSIKYSH
PGETDGTRLLLICDVALGKCMDLHEKDFSLTEAPPGYDSVHGVSQTASVTTDFEDDEFVVYKTNQVKMKY
IIKFSMPGDQIKDFHPSDHTELEEYRPEFSNFSKVEDYQLPDAKTSSSTKAGLQDASGNLVPLEDVHIKG
RIIDTVAQVIVFQTYTNKSHVPIEAKYIFPLDDKAAVCGFEAFINGKHIVGEIKEKEEAQQEYLEAVTQG
HGAYLMSQDAPDVFTVSVGNLPPKAKVLIKITYITELSILGTVGVFFMPATVAPWQQDKALNENLQDTVE
KICIKEIGTKQSFSLTMSIEMPYVIEFIFSDTHELKQKRTDCKAVISTMEGSSLDSSGFSLHIGLSAAYL
PRMWVEKHPEKESEACMLVFQPDLDVDLPDLASESEVIICLDCSSSMEGVTFLQAKQIALHALSLVGEKQ
KVNIIQFGTGYKELFSYPKHITSNTMAAEFIMSATPTMGNTDFWKTLRYLSLLYPARGSRNILLVSDGHL
QDESLTLQLVKRSRPHTRLFACGIGSTANRHVLRILSQCGAGVFEYFNAKSKHSWRKQIEDQMTRLCSPS
CHSVSVKWQQLNPDVPEALQAPAQVPSLFLNDRLLVYGFIPHCTQATLCALIQEKEFRTMVSTTELQKTT
GTMIHKLAARALIRDYEDGILHENETSHEMKKQTLKSLIIKLSKENSLITQFTSFVAVEKRDENESPFPD
IPKVSELIAKEDVDFLPYMSWQGEPQEAVRNQSLLASSEWPELRLSKRKHRKIPFSKRKMELSQPEVSED
FEEDGLGVLPAFTSNLERGGVEKLLDLSWTESCKPTATEPLFKKVSPWETSTSSFFPILAPAVGSYLPPT
ARAHSPASLSFASYRQVASFGSAAPPRQFDASQFSQGPVPGTCADWIPQSASCPTGPPQNPPSSPYCGIV
FSGSSLSSAQSAPLQHPGGFTTRPSAGTFPELDSPQLHFSLPTDPDPIRGFGSYHPSASSPFHFQPSAAS
LTANLRLPMASALPEALCSQSRTTPVDLCLLEESVGSLEGSRCPVFAFQSSDTESDELSEVLQDSCFLQI
KCDTKDDSILCFLEVKEEDEIVCIQHWQDAVPWTELLSLQTEDGFWKLTPELGLILNLNTNGLHSFLKQK
GIQSLGVKGRECLLDLIATMLVLQFIRTRLEKEGIVFKSLMKMDDASISRNIPWAFEAIKQASEWVRRTE
GQYPSICPRLELGNDWDSATKQLLGLQPISTVSPLHRVLHYSQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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