NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52549.1 Public Mus musculus 8 Cldn24 23 108 98 CCDS HistoryNCBI Gene:100039801Re-query CCDS DB by CCDS ID:52549.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079639.2 ENSMUSP00000078584.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079639.2Link to Ensembl Protein Viewer:ENSMUSP00000078584.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000079639Re-query CCDS DB by Protein ID:ENSMUSP00000078584
Original member Current member NCBI NM_001111318.1 NP_001104788.1 Accepted alive Link to Nucleotide Sequence:NM_001111318.1Link to Protein Sequence:NP_001104788.1Re-query CCDS DB by Nucleotide ID:NM_001111318Re-query CCDS DB by Protein ID:NP_001104788Link to BLAST:NP_001104788.1

Chromosomal Locations for CCDS 52549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 47822143 47822805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGGCTTTCATCTTCAGAACGGCCATGCAATCAGTAGGGCTTTCTCTGTCATTGCTGGGATGGGTTCTAG
CCATTATTACCACATATCTACCACACTGGAAGAACCTTAACTTGGAGCTGAACGAGATGGAGAACTGGAC
CATGGGGCTCTGGAAATCCTGCGTCATCCAGGAGGAAGTCGGGAGGCAATGCAAGGACTTTGACTCCTTC
CTGGCCTTGCCAGCTGAACTGCAGGTCTCCAGGGTCTTGATGTCCCTGTGCAACGGGCTGGGGCTGCTGG
GCTTGCTGGCCTCTGGCTGTGGCCTGGACTGCTTGAGGCTTGGAGAGACACAGGAGGGTCTGAAGAAGCG
GCTGCTCACCCTGGGAGGGACCCTGCTCTGGACCTCGGGAGTCATGGTGCTAGTTCCTGTCTCCTGGGTG
GCCCACAAGACGGTGCGGGAGTTCTGGGATGAGACCATGCCTGAGATTGTGCCCAGGTGGGAGTTTGGGG
AGGCCCTGTTCCTGGGCTGGTTTGCTGGCTTCTGCCTGGTGCTAGGAGGGTGTGTGCTTCACTGTGCAGC
CTGCTCGAGCCCAGCTCCTGCAGCCTCGAGTCACTATGCAGGGGCGGGACCTCGAGATCATGGTTCATAC
CTAGAAAATGGAACTGTACAGCCTAAAGTGTAA

Translation (220 aa):
MAFIFRTAMQSVGLSLSLLGWVLAIITTYLPHWKNLNLELNEMENWTMGLWKSCVIQEEVGRQCKDFDSF
LALPAELQVSRVLMSLCNGLGLLGLLASGCGLDCLRLGETQEGLKKRLLTLGGTLLWTSGVMVLVPVSWV
AHKTVREFWDETMPEIVPRWEFGEALFLGWFAGFCLVLGGCVLHCAACSSPAPAASSHYAGAGPRDHGSY
LENGTVQPKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH