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Report for CCDS51507.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51507.2 Public Mus musculus 5 Dthd1 23 108 98 CCDS HistoryNCBI Gene:100322896Re-query CCDS DB by CCDS ID:51507.2See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 51507.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238474.1 ENSMUSP00000158635.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238474.1Link to Ensembl Protein Viewer:ENSMUSP00000158635.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238474Re-query CCDS DB by Protein ID:ENSMUSP00000158635
Original member Current member NCBI NM_001170705.2 NP_001164176.2 Accepted alive Link to Nucleotide Sequence:NM_001170705.2Link to Protein Sequence:NP_001164176.2Re-query CCDS DB by Nucleotide ID:NM_001170705Re-query CCDS DB by Protein ID:NP_001164176Link to BLAST:NP_001164176.2

Chromosomal Locations for CCDS 51507.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 62811807 62812077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62813777 62814389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62818539 62818869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62821884 62822063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62827019 62827269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62839240 62839404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62842818 62843104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62849726 62849964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62882264 62882321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 62887960 62888282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2718 nt):
ATGGATACAGAAGATATGGGGTCAGGTAAATTAGGTCAAATATTGAGTCAGATTTGGAGACAAAACCAAA
TGTTAACAAAGGCACTCCAAGGTGATGATCTCTGTAAGGGAGCTGGTGGAGCCACTTGGATAGCCACAGT
GATCTTTTTGGGTCAAAGACTCAATGAAGCCCTTTATCAACTTTTGGAACACACTGCAGGGTCCCTTCGG
TCTACCTGCCAACAGCTGTATATACTACTTGACAAGGATAATCAATGTATCTGGAGACAAGAAATTATCG
CTTTCATAGACTGCCTCATGAAAATGAATGAACATTTGGGGAATACTGCTATGCTTCTAAAGAAAGAGGA
AAAGGAAATGTGTAATTTATGCAGCATGCATGAGGACCGTACTCCACAGCAGACAATATCAGCCATTCAG
GATACCAAAGCAACAGACATTGCTCCAAGAAGGGAACTAAATGTCATGGAAACAGCTACTGTTGCTTCTA
CAAATGCAGGGGAGAGCCATTCCACCAACCAGGTCCAGTTAACAGAAAATAAAACACAGATAAATTCTGA
TTTAGGGAAAAAAGAAAACAATGACCCATTGAGTGGAAATGTAATAGGGCAAGAAGAGTCACAGAGCACA
GTGTTCCCAGATAATGCAGAAAATGAAGATGAAAAACAAATAGAACACGTGACTGCTGAGAACATAAATG
GTAACAAGAAAGATATTCATGATGCAATCCAGACAACAGCAAGGGAAATTCAAGAGACCTCAAAAAGCCA
AAGAGAAAAGATTACCACATCCCCAACAGCATGGGATGTCTCCAGTAAGGACATGAATAATCTTTATAAT
GAGTCAGAGAGTCTAAAACAAAAGAGTAACATAATGGAAAAGGAGTATCTTGCTGTTCTGAGTGATGGGA
CTGACCCTCAAGTCTCTTGTTATGTTACAGCACCATTGCACGTCCTACAGTGGTTTGACTGCCAGATAAC
TAATGACATGAGCTCCTTTATAGTGAGTGATAATGAAGAGTTGGTCAGCAATGTCATCACTGTTGAATGC
TCAGATAAGGACAAGGAAATTCCATTCCCAATATGCATTACAATTCCATTCAAGGCATGCTACAAGGGAA
ATTACAGAGACATCATGGTGAAAATGTCGGACAGAAACTTTCAGTCAAGTTACCTTATCCCAAATTTACT
GGAAAGAATGAGAGGAAGTTGTAAGGGGACTTGTGCTTCAGTCTATGTTTACAAGTTGGGGATGTTTTCT
GTAGTGTCATGTTTAAAAAAACAGTCTTTCACAGTTACAAAGAAGGGGCTCACTTGGAAGTCCAGCATGG
ATGCCAGGATATCCTTCAGTTATCCTGCAGGAGTTTTCACTTCACCAGTGCTTGTACAATTAAAGATCCA
GCCAGTTGACCCTTCTCTAGTGTCATATTTAAAAGCACATCAAGATCCTTCCTATTCAGTAATGTCCACC
AGTCCACTTATCTGCATCCAGCATCCATCAACTCATCCCTTTCAGAAGCCAGTCACTGTGTTTCTCCCTT
GTTCTCCTCTCCCTGAAAAAAAGAACCTTGAGTCTGAGAAAGATCACAGGAGACCAGAGAGTGCAACAGT
GCACAGGAGCCTGCAAACACCCTCCTATTTCAACAGGTCCAAAAGTCCATCTCTCCGAAAACCTGGTAAC
AGTGCATGTGAAACTTTAAAATTACTAGGATTCAGGAGCCGAGACAGTGGTTGGTTTGGGATTGATGATG
TTGTGGTGAGAACTGTCCAGAGTGGCTTGGTATCATTTGAATTATGTGAACACTTAGAGAGGTTTATAGT
ACTCAACCTGTCTTCCCCAGTGGACAACAGCCTCTTGGTTTCTTTTGTCAAGTCGTTAGAGGAAGCCTCT
CTCAGTACCACTGCCTGCATTGTACTGTCACACCAGAAGGACAACCCACATCGGGTGGTTATTTTAGTGG
TACCTTCTAAGGAGTTAAGTCTCGTGCTGAAGAGCTTGCGCTCAGAAGGGTTTGGAGGACCAGAATCATC
TAGACAATTCCAAGTAAGAGAAGGAGAACAACTTCTTTTGAGGTTTACTGGAAACATATTTGGTTCAAGC
AATGGGAAGGATTATGAGAAAGACTACAAGCTCATTTTTCACCTGCAAAGAAAACCCAGGCTAGAACTCC
ACATCAAAGAGGTGGATGAATTTGGGAATTATAGCTGCCCTCATTATAAAGGTACCATTACAGTTTACAA
AGTACCCAGAGAGAAGATCGTCCCCAACTTGGATCAAACACTTCATGAAACTTTTTATCAGTTTCCAGTT
TGCAAATTACCACTGAAATTGCCAAAGCATGAAAAAGTGATTAACCGTCCACAGAGCACCAAGAGAGTTT
CTACAGACCCCCTAGTGGCCCTTTGGGATAACTTGCTCCACTGGCTGGCTGAGGAACTCGCTGAAGAAGG
TGCTGAGGTCCTCGCTGCATCCCTCCCACTGCGCCGCAGCACAGTCCAGCTCATCAAACTTAAGCATCCC
GATGATCCAACAGAGCAGATCCACGAACTCCTTTGCTTCTGGAAAAGATCACTCCCGACTTCCACTGACA
AAATTCGTCTCCTGGCGCGCCATCTCCGCAAAATGGGCCGCGGTGATCTCACAGAAGAGCTCAAATTCAA
ATGGGAACACAAGGTGTTCACAGAACCGCAATCTTGGTTTGATGTGGCTACTGAATAA

Translation (905 aa):
MDTEDMGSGKLGQILSQIWRQNQMLTKALQGDDLCKGAGGATWIATVIFLGQRLNEALYQLLEHTAGSLR
STCQQLYILLDKDNQCIWRQEIIAFIDCLMKMNEHLGNTAMLLKKEEKEMCNLCSMHEDRTPQQTISAIQ
DTKATDIAPRRELNVMETATVASTNAGESHSTNQVQLTENKTQINSDLGKKENNDPLSGNVIGQEESQST
VFPDNAENEDEKQIEHVTAENINGNKKDIHDAIQTTAREIQETSKSQREKITTSPTAWDVSSKDMNNLYN
ESESLKQKSNIMEKEYLAVLSDGTDPQVSCYVTAPLHVLQWFDCQITNDMSSFIVSDNEELVSNVITVEC
SDKDKEIPFPICITIPFKACYKGNYRDIMVKMSDRNFQSSYLIPNLLERMRGSCKGTCASVYVYKLGMFS
VVSCLKKQSFTVTKKGLTWKSSMDARISFSYPAGVFTSPVLVQLKIQPVDPSLVSYLKAHQDPSYSVMST
SPLICIQHPSTHPFQKPVTVFLPCSPLPEKKNLESEKDHRRPESATVHRSLQTPSYFNRSKSPSLRKPGN
SACETLKLLGFRSRDSGWFGIDDVVVRTVQSGLVSFELCEHLERFIVLNLSSPVDNSLLVSFVKSLEEAS
LSTTACIVLSHQKDNPHRVVILVVPSKELSLVLKSLRSEGFGGPESSRQFQVREGEQLLLRFTGNIFGSS
NGKDYEKDYKLIFHLQRKPRLELHIKEVDEFGNYSCPHYKGTITVYKVPREKIVPNLDQTLHETFYQFPV
CKLPLKLPKHEKVINRPQSTKRVSTDPLVALWDNLLHWLAEELAEEGAEVLAASLPLRRSTVQLIKLKHP
DDPTEQIHELLCFWKRSLPTSTDKIRLLARHLRKMGRGDLTEELKFKWEHKVFTEPQSWFDVATE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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