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Report for CCDS51635.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51635.1 Public Mus musculus 5 Rita1 23 108 98 CCDS HistoryNCBI Gene:100764Re-query CCDS DB by CCDS ID:51635.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51635.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031599.8 ENSMUSP00000031599.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031599.8Link to Ensembl Protein Viewer:ENSMUSP00000031599.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000031599Re-query CCDS DB by Protein ID:ENSMUSP00000031599
Original member Current member EBI ENSMUST00000177800.7 ENSMUSP00000136946.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177800.7Link to Ensembl Protein Viewer:ENSMUSP00000136946.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177800Re-query CCDS DB by Protein ID:ENSMUSP00000136946
Original member Current member NCBI NM_029096.3 NP_083372.1 Accepted alive Link to Nucleotide Sequence:NM_029096.3Link to Protein Sequence:NP_083372.1Re-query CCDS DB by Nucleotide ID:NM_029096Re-query CCDS DB by Protein ID:NP_083372Link to BLAST:NP_083372.1
Original member Current member NCBI NM_133908.1 NP_598669.1 Accepted alive Link to Nucleotide Sequence:NM_133908.1Link to Protein Sequence:NP_598669.1Re-query CCDS DB by Nucleotide ID:NM_133908Re-query CCDS DB by Protein ID:NP_598669Link to BLAST:NP_598669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083372.1 253 Q9D1H0 253 100% 0 0
NP_598669.1 253 Q9D1H0 253 100% 0 0

Chromosomal Locations for CCDS 51635.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120609470 120609962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120611378 120611646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGAAAGCCCTCCACCTTCAGCACCGCAGTCCCACCAGCTACAGGGTCAAGGCCAGGGCATCCTATGTGG
ATGAGACCCTGTTTGGCAGCCCAGCAAGAACCAGACCTGCCCAACCAGACTTTGACCCACCCTGGGTGCA
GAATTGTAACCGATCCAGAGGAGTGGGCCCAGGACCACCGAAGGGCTCTCTGGCCAAGAGAGACTGTGAG
TCCCCCTCTTCCAGGGGCAGCACCCCAAACCTCACACCAAGGAAGAAAAACAAATACAGGCTGATTGGCC
ATGCCCCATCCTACTGCGATGAGTCACTGTTTGGCACTAGCAAGGAGGGGTCTCGGATGGCCGTGGGGGA
TGCTGCAAAGCTCCGGACCCTTTTCTGGACCCCACCAGCCACCCCTAGGGGCAGCCACACACCTTGCCCC
AGGGAGACCCCTCTGCGAGCCATTCACCCAGCTGGACCCTCCAGGACAGAGCCCAGAGTGACTGCAGGCT
CCCAGATGTCATCCCAGGATGGGTTGTGTGTTCCCTGCTCTCTGGGACAGAGGCGGTCCCATTCACTCAC
CCACCTAACTGTCCCCAGCACGGGTCATCCAGCTTCCAGTGCTCCCCAGACCAATGGGCCTTGGAGTCCC
CGGCCTAACACATCAGGGGCGACTGTCCAGAGTCCCCTGGTCACTTCCAAGGCATGCTCAGGTCGTGTTT
CGGGGCCAGCTCCCCCTCGGCGAGGGGCCTGTCCTCCCAAGCCGAAGCCTCCTTGGAAGTGA

Translation (253 aa):
MKALHLQHRSPTSYRVKARASYVDETLFGSPARTRPAQPDFDPPWVQNCNRSRGVGPGPPKGSLAKRDCE
SPSSRGSTPNLTPRKKNKYRLIGHAPSYCDESLFGTSKEGSRMAVGDAAKLRTLFWTPPATPRGSHTPCP
RETPLRAIHPAGPSRTEPRVTAGSQMSSQDGLCVPCSLGQRRSHSLTHLTVPSTGHPASSAPQTNGPWSP
RPNTSGATVQSPLVTSKACSGRVSGPAPPRRGACPPKPKPPWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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