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Report for CCDS61864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61864.1 Public Homo sapiens 16 NPIPA7 24 110 108 CCDS HistoryNCBI Gene:101059938Re-query CCDS DB by CCDS ID:61864.1See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 61864.1
The exon combination of this CCDS representation is inferred. It is supported by partial transcript alignments and by paralogous NPIPA gene alignments.

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 61864.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530217.3 ENSP00000431814.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000530217.3Link to Ensembl Protein Viewer:ENSP00000431814.2Re-query CCDS DB by Nucleotide ID:ENST00000530217Re-query CCDS DB by Protein ID:ENSP00000431814
Original member Current member NCBI NM_001282507.2 NP_001269436.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282507.2Link to Protein Sequence:NP_001269436.1Re-query CCDS DB by Nucleotide ID:NM_001282507Re-query CCDS DB by Protein ID:NP_001269436Link to BLAST:NP_001269436.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269436.1 369 E9PJI5 369 100% 0 0

Chromosomal Locations for CCDS 61864.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 16379245 16379307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16383664 16383792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16387399 16387498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16387662 16387806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16390767 16390874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16391891 16391951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16392061 16392096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16393456 16393923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGTTTTGTTGCTTAGGATATGAATGGCTGAGCGGAGGCTGTACAACCTGGCACTCTGCTTGGGTTATCA
ATACTCTGGCTGACCATCGTCATCGTGGGACTGACTTTGGTGGAAGTCCTTGGTTACTTATCATTACTGT
GTTTCTGAGAAGTTATAAATTTGCCATCTCCCTCTGCACAAGTTACCTTTGTGTGTCTTTCCTGAAGACT
ATCTTCCCATCTCAAAATGGACATGATGGATCCACGGATGTACAGCAGAGAGCCAGGAGGTCCAACCGCC
GTAGACAGGAAGGAATTAAAATTGTCCTGGAAGACATCTTTACTTTATGGAGACAGGTGGAAACCAAAGT
TCGAGCTAAAATCCGTAAGATGAAGGTGACAACAAAAGTCAACCGTCATGACAAAATCAATGGAAAGAGG
AAGACCGCCAAAGAACATCTGAGGAAACTAAGCATGAAAGAACGTGAGCACAGAGAAGAGGAGAGGCAGG
TGTCAGAGGCAGAGGAAAATGGGAAATTGGATATGAAAGAAATACACACCTACATGGAAATGTTTCAACG
TGCGCAAGCGTTGCGGCGGCGGGCAGAGGACTACTACAGATGCAAAATCACCCCTTCTGCAAGAAAGCCT
CTTTGCAACCGGGTCAGAATGGCGGCAGTGGAGCATCGTCATTCTTCAGGATTGCCCTACTGGCCCTACC
TCACAGCTGAAACTTTAAAAAACAGGATGGGCCACCAGCCACCTCCTCCAACTCAACAACATTCTATAAT
TGATAACTCCCTGAGCCTCAAGACACCTTCCGAGTGTGTGCTCTATCCCCTTCCACCCTCAGCGGATGAT
AATCTCAAGACACCTCCCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCTACCCTCAGCGGATGATA
ATCTCAAGACACCTGCCGAGTGCCTGCTCTATCCCCTTCCACCCTCAGCGGATGATAATCTCAAGACACC
TCCCGAGTGTCTGCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCGGATGATAATCTCAAGACACCT
CCTGAGTGTGTCTGCTCACTCCCCTTCCACCCTCAGCGGATGATAATCTCAAGAAACTAA

Translation (369 aa):
MFCCLGYEWLSGGCTTWHSAWVINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCTSYLCVSFLKT
IFPSQNGHDGSTDVQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKR
KTAKEHLRKLSMKEREHREEERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKP
LCNRVRMAAVEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPSECVLYPLPPSADD
NLKTPPECLLTPLPPSALPSADDNLKTPAECLLYPLPPSADDNLKTPPECLLTPLPPSAPPSADDNLKTP
PECVCSLPFHPQRMIISRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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