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Report for CCDS24544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24544.1 Public Mus musculus 11 Rars1 23 108 98 CCDS HistoryNCBI Gene:104458Re-query CCDS DB by CCDS ID:24544.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018992.3 ENSMUSP00000018992.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018992.3Link to Ensembl Protein Viewer:ENSMUSP00000018992.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000018992Re-query CCDS DB by Protein ID:ENSMUSP00000018992
Original member Current member NCBI NM_025936.3 NP_080212.2 Accepted alive Link to Nucleotide Sequence:NM_025936.3Link to Protein Sequence:NP_080212.2Re-query CCDS DB by Nucleotide ID:NM_025936Re-query CCDS DB by Protein ID:NP_080212Link to BLAST:NP_080212.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080212.2 660 Q9D0I9 660 100% 0 0

Chromosomal Locations for CCDS 24544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 35808482 35808591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35809095 35809342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35809628 35809800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35815639 35815744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35816637 35816746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35817350 35817528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35819874 35819978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35821096 35821225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35824396 35824516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35825987 35826108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35826477 35826577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35827358 35827466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35828625 35828813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35833172 35833306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35834437 35834481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGGACGGTCTGGTGGCTCAGTGCTCCGCGCGGTTGCTGCAGCAGGAAAGGGAGATTAAGGCTCTGACTG
CTGAGATCGACCGGCTGAAGAACTGTGGCTGCTTGGAAGCTTCTCCAAGTTTGGAACAGTTACGAGAAGA
AAATTTAAAATTGAAGTATAGGCTGAATATTCTTCGAAGGAGTCTTCAGGAAGAAAGGAGAAAACCAACT
AAAAACATGATTAACATCAACAGCCGCCTGCAGGAAGTCTTTGGCTGTGCCATTAGGGCTGCATATCCAG
ACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCCAAGTTTGGAGACTATCAGTGTAATAG
TGCCATGGGTATTTCTCAGATGCTCAAGGCAAAGGAACAGAAAGTCAGTCCCAGAGAAATCGCAGAAAAC
ATTACCAAACACCTGCCGAACAATAAATATATTGACAAAGTTGAAATTGCGGGTCCTGGTTTCATTAATG
TGCACCTGAGAAAAGACTTTGTGTCAGAACAGCTAACCAGTCTCCTAGTGAATGGAGTCCAGCTGCCTGT
GCTTGGAGACAAGGAGAAGGTTATAGTTGACTTTTCCTCTCCCAACATAGCTAAGGAGATGCATGTTGGC
CACCTCAGGTCAACCATCATAGGAGAGAGCATGAGCCGCCTCTTTGAATTTGCAGGATACGATGTGCTAA
GGTTAAACCATGTAGGAGATTGGGGAACCCAGTTTGGCATGCTCATCGCTCACCTGCAAGATAAATTTCC
GGATTATCTGACAGTTTCACCTCCTATTGGGGATCTGCAGGCCTTTTATAAGGAATCTAAGAAGAGGTTT
GATGCTGATGAGGAGTTTAAGAAGCGAGCCTATCAGTGTGTCGTTTTGCTGCAGAGTAAAAACCCAGATA
TCATGAAAGCCTGGAACCTCATCTGTGACGTGTCCCGGGAAGAGTTTAAGAAAATCTATGATGCATTGGA
CATCACTTTAATAGAGAGAGGAGAATCCTTCTATCAAGATAGGATGAAGGACATTGTAAAGGAATTTGAA
GATAAAGGGTTTGTGCAAGTGGATGATGGCAGAAAAATTGTGTTCGTGCCTGGGTGTTCTGTGCCATTAA
CGATAGTGAAATCAGATGGGGGCTATACCTATGACACATCTGACCTGGCTGCCATCAAACAGAGACTGTT
TGAAGAAAAAGCAAACAAGATTATTTATGTGGTGGACAATGGACAAGCTATACACTTCCAGACAATATTT
GCTGCTGCTCAGATGATTGGCTGGTATGACCCGAAAGTAACTCTAGTGACCCACGTGGGATTTGGTGTCG
TCCTAGGAGAAGACAAGAAGAAATTTAAAACACGTTCAGGTGAAACTGTGCGCCTTATGGACCTGCTGGA
AGAAGGGCTGAAACGGTCCATGGACAAGCTAAAGGAGAAAGAGAGAGACAAGGTCTTAACTGAAGAGGAA
TTGAAAGCAGCTCAGACATCCGTTGCATATGGCTGCATCAAATACGCCGACCTTTCTCATAATCGCCTCA
ATGACTACATCTTCTCCTTTGACAAGATGCTGGATGACAGAGGGAACACAGCTGCTTACCTACTGTATGC
CTTCACCAGAATCAGGTCTATTGCGCGCCTCGCCAACATTGATGAGGCGATGCTACAGAGAGCCGCTCGG
GAAACCAAGATCATTTTGGACCATGAAAAGGAGTGGAAGCTGGGGCGGTGCATCTTACGGTTCCCCGAGA
TCCTCCAGAAGATCTTAGACGACCTGTTTCTCCACACCCTCTGTGACTACATTTACGAGCTGGCAACCAC
CTTCACAGAGTTCTACGATAGCTGCTACTGTGTGGAGAAAGATCGACAGACTGGGAAAGTATTGAAAGTG
AACATGTGGCGGATGCTCCTGTGTGAGGCCGTGGCTGCTGTCATGGCCAAGGGGTTCGATATACTGGGGA
TAAAACCCGTCCAAAGGATGTAA

Translation (660 aa):
MDGLVAQCSARLLQQEREIKALTAEIDRLKNCGCLEASPSLEQLREENLKLKYRLNILRRSLQEERRKPT
KNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQPKFGDYQCNSAMGISQMLKAKEQKVSPREIAEN
ITKHLPNNKYIDKVEIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVG
HLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRF
DADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFE
DKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHFQTIF
AAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFKTRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTEEE
LKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEAMLQRAAR
ETKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKV
NMWRMLLCEAVAAVMAKGFDILGIKPVQRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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