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Report for CCDS26218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26218.1 Public Mus musculus 13 Akr1c14 23 108 98 CCDS HistoryNCBI Gene:105387Re-query CCDS DB by CCDS ID:26218.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26218.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041768.6 ENSMUSP00000045394.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041768.6Link to Ensembl Protein Viewer:ENSMUSP00000045394.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041768Re-query CCDS DB by Protein ID:ENSMUSP00000045394
Original member Current member EBI ENSMUST00000118717.9 ENSMUSP00000112664.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118717.9Link to Ensembl Protein Viewer:ENSMUSP00000112664.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000118717Re-query CCDS DB by Protein ID:ENSMUSP00000112664
Original member Current member NCBI NM_134072.2 NP_598833.1 Accepted alive Link to Nucleotide Sequence:NM_134072.2Link to Protein Sequence:NP_598833.1Re-query CCDS DB by Nucleotide ID:NM_134072Re-query CCDS DB by Protein ID:NP_598833Link to BLAST:NP_598833.1

Chromosomal Locations for CCDS 26218.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 4059632 4059715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4063554 4063721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4065325 4065441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4077970 4078047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4079054 4079176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4080619 4080728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4080990 4081155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4087235 4087317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4088948 4088990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGAATTCTGTATCCCCACGTGTGGTACTAAACGATGGTCACTTCATCCCTGCACTGGGGTTTGGAACCA
CTGTGCCCGATAAGGTTCCTAAGGATGAACTTATCAAGGCTACTAAAATAGCTATAGATACTGGATTCCG
CCATTTTGACTCCGCTTATTTGTACCAAATAGAAGAGGAAGTAGGCCAGGCCATTAGAAGCAAGATTGAA
GATGGCACTGTGAAGAGAGAAGATATATTCTATACTTCAAAGCTTTGGAGCACTTTCCATCGACCAGAAT
TGGTCCGATCTTGCTTGGAAAAGACACTGAAGAATGCACAACTGGACTATGTTGATCTTTACATTATTCA
TTTCCCAATGGCTTTGCAGCCTGGAGATAAACTATTTCCACGAGACGAACATGGAAAACTGTTGGCTGAA
GCAGTGGATCTCTGTGACACATGGGAGGCCATGGAAAAGTGTAAAGATGCCGGACTGGCCAAGTCCATCG
GAGTGTCGAACTTTAACTTCAGGCAGCTGGAGACGATTCTGAACAAGCCGGGGCTCAAGTACAAGCCTGT
GTGCAACCAGGTAGAATGCCATCTTTATTTAAACCAGAGCCAAATGCTGGACTATTGTAAGTCAAAAGAC
ATCATTCTGGTTTCCTACTGCACATTGGGAAGTTCACGAGACAAAATCTGGGTGGACCAGAAAAGTCCAG
TTCTCTTAGATGATCCAGTTCTTTGTGCCATGGCAAATAAGTACAAGCAAACACCAGCACTGATTGCCAT
TCGTTACCAATTACAGCGTGGAATTGTGGTCCTGACCAGGAGTTTCAAGGAGAAGCGGATCAAAGAGTTC
ATGAAGGTTTTTGAATTCCAGTTGGCTTCAGAGGACATGAAAGTCCTGGATGGCTTGCACAGAAATTTAA
GATACAATACTGCGAGTTATTTTGATGACCATCCCAATCATCCATTTACTGATGAATATTAA

Translation (323 aa):
MNSVSPRVVLNDGHFIPALGFGTTVPDKVPKDELIKATKIAIDTGFRHFDSAYLYQIEEEVGQAIRSKIE
DGTVKREDIFYTSKLWSTFHRPELVRSCLEKTLKNAQLDYVDLYIIHFPMALQPGDKLFPRDEHGKLLAE
AVDLCDTWEAMEKCKDAGLAKSIGVSNFNFRQLETILNKPGLKYKPVCNQVECHLYLNQSQMLDYCKSKD
IILVSYCTLGSSRDKIWVDQKSPVLLDDPVLCAMANKYKQTPALIAIRYQLQRGIVVLTRSFKEKRIKEF
MKVFEFQLASEDMKVLDGLHRNLRYNTASYFDDHPNHPFTDEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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