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Report for CCDS27470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27470.1 Public Mus musculus 15 Mal2 23 108 98 CCDS HistoryNCBI Gene:105853Re-query CCDS DB by CCDS ID:27470.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27470.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025356.3 ENSMUSP00000025356.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025356.3Link to Ensembl Protein Viewer:ENSMUSP00000025356.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025356Re-query CCDS DB by Protein ID:ENSMUSP00000025356
Original member Current member NCBI NM_178920.4 NP_849251.1 Accepted alive Link to Nucleotide Sequence:NM_178920.4Link to Protein Sequence:NP_849251.1Re-query CCDS DB by Nucleotide ID:NM_178920Re-query CCDS DB by Protein ID:NP_849251Link to BLAST:NP_849251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849251.1 175 Q8BI08 175 100% 0 0

Chromosomal Locations for CCDS 27470.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 54571509 54571637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 54588314 54588484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 54598411 54598566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 54600671 54600742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGTCGGCCGGCGGAGCAGTCCCGCCGCCCCCGAACCCTGCCGTGTCCTTCCCGGCGCCCCGGGTCACCC
TGCCCGCTGGCCCCGACATCCTAAGGACGTACTCCGGAGCTTTCGTCTGTCTGGAGATTGTGCTTGGAGG
ACTTGTCTGGATTTTGGTTGCTTCCTCCAATGTTCCTCTACCTCTGCTCCAAGGATGGGTCATGTTTGTG
TCGGTGACAGCTTTCTTCTTTTCGCTTCTCTTCCTGGGCTTGTTCCTCTCTGGTATGGTGACTCAGATTG
ATGCCAACTGGAACTTCCTGGATTTTGTCTACCATTTCATAGTCTTTGTCTTCTACTTCGGAGCGTTTTT
ACTGGAAGCAGCGGCCACCTCCCTGCATGACCTTCAGTGCAACACAACCATGACTGTGAAGCCACTACTC
AACGACAACCAGTATAACATCAACGTGGCCGCCACAGTTTTTGCCTTCATGACAACAGCTTGTTATGGTT
GCAGTTTGGGTCTGGCTTTGCGAAGATGGCGACCGTAA

Translation (175 aa):
MSAGGAVPPPPNPAVSFPAPRVTLPAGPDILRTYSGAFVCLEIVLGGLVWILVASSNVPLPLLQGWVMFV
SVTAFFFSLLFLGLFLSGMVTQIDANWNFLDFVYHFIVFVFYFGAFLLEAAATSLHDLQCNTTMTVKPLL
NDNQYNINVAATVFAFMTTACYGCSLGLALRRWRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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