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Report for CCDS28868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28868.1 Public Mus musculus 17 Apobec2 23 108 98 CCDS HistoryNCBI Gene:11811Re-query CCDS DB by CCDS ID:28868.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28868.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046549.4 ENSMUSP00000047402.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046549.4Link to Ensembl Protein Viewer:ENSMUSP00000047402.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000046549Re-query CCDS DB by Protein ID:ENSMUSP00000047402
Original member Current member NCBI NM_009694.3 NP_033824.1 Accepted alive Link to Nucleotide Sequence:NM_009694.3Link to Protein Sequence:NP_033824.1Re-query CCDS DB by Nucleotide ID:NM_009694Re-query CCDS DB by Protein ID:NP_033824Link to BLAST:NP_033824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033824.1 224 Q9WV35 224 100% 0 0

Chromosomal Locations for CCDS 28868.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48422962 48423505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48432479 48432609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGCTCAGAAGGAAGAGGCCGCTGAGGCTGCGGCGCCAGCCTCTCAGAATGGAGATGATTTGGAGAACC
TG
GAAGACCCTGAGAAGCTGAAAGAGCTGATCGATCTTCCGCCCTTCGAGATTGTCACTGGGGTGCGGCT
A
CCAGTCAACTTCTTCAAGTTTCAGTTCCGGAACGTGGAATACAGTTCCGGGCGGAATAAGACCTTTCTC
TGC
TATGTGGTCGAAGTACAGAGTAAGGGCGGCCAAGCGCAGGCGACGCAGGGCTACCTGGAGGATGAAC
AC
GCAGGTGCCCACGCCGAGGAGGCTTTCTTTAACACCATCCTGCCAGCTTTCGACCCGGCCCTCAAGTA
C
AATGTCACCTGGTATGTGTCCTCCAGCCCCTGTGCAGCCTGCGCTGACCGGATTCTCAAAACCCTCAGC
AAG
ACTAAGAACCTTCGTCTGCTCATTCTGGTGAGCCGGCTCTTCATGTGGGAGGAGCCAGAGGTCCAGG
CC
GCTCTGAAAAAGCTGAAGGAGGCCGGCTGCAAACTTCGCATCATGAAACCCCAGGACTTCGAGTACAT
C
TGGCAGAATTTTGTGGAGCAAGAAGAGGGTGAATCCAAGGCCTTTGAGCCCTGGGAGGACATTCAGGAG
AAC
TTCCTATACTATGAGGAGAAGTTGGCAGACATCCTGAAGTAG


Translation (224 aa):
MAQKEEAAEAAAPASQNGDDLENLEDPEKLKELIDLPPFEIVTGVRLPVNFFKFQFRNVEYSSGRNKTFL
C
YVVEVQSKGGQAQATQGYLEDEHAGAHAEEAFFNTILPAFDPALKYNVTWYVSSSPCAACADRILKTLS
K
TKNLRLLILVSRLFMWEEPEVQAALKKLKEAGCKLRIMKPQDFEYIWQNFVEQEEGESKAFEPWEDIQE
N
FLYYEEKLADILK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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