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Report for CCDS39204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39204.1 Public Mus musculus 5 Atp5me 23 108 98 CCDS HistoryNCBI Gene:11958Re-query CCDS DB by CCDS ID:39204.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39204.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049628.15 ENSMUSP00000051222.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049628.15Link to Ensembl Protein Viewer:ENSMUSP00000051222.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000049628Re-query CCDS DB by Protein ID:ENSMUSP00000051222
Original member Current member NCBI NM_007507.3 NP_031533.2 Accepted alive Link to Nucleotide Sequence:NM_007507.3Link to Protein Sequence:NP_031533.2Re-query CCDS DB by Nucleotide ID:NM_007507Re-query CCDS DB by Protein ID:NP_031533Link to BLAST:NP_031533.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031533.2 71 Q06185 71 100% 0 0

Chromosomal Locations for CCDS 39204.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108433312 108433337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108433731 108433829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108434026 108434080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108434326 108434361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (216 nt):
ATGGTGCCCCCGGTTCAGGTCTCTCCACTCATCAAGTTCGGCCGGTACTCCGCTCTGATCATCGGCATGG
CATACGGCGCCAAGCGCTACAGTTACCTAAAACCCCGGGCAGAGGAGGAGAGGAGAATAGCAGCGGAGGA
AAAGAAGAGACTAGATGAGTTGAAACGGATTGAGAGAGAACTGGCGGAAGCTCAAGATGACAGCATTCTC
AAGTGA

Translation (71 aa):
MVPPVQVSPLIKFGRYSALIIGMAYGAKRYSYLKPRAEEERRIAAEEKKRLDELKRIERELAEAQDDSIL
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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