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Report for CCDS28476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28476.1 Public Mus musculus 17 Atp6v0c 23 108 98 CCDS HistoryNCBI Gene:11984Re-query CCDS DB by CCDS ID:28476.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024932.11 ENSMUSP00000024932.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024932.11Link to Ensembl Protein Viewer:ENSMUSP00000024932.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000024932Re-query CCDS DB by Protein ID:ENSMUSP00000024932
Original member Current member EBI ENSMUST00000098862.8 ENSMUSP00000111059.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098862.8Link to Ensembl Protein Viewer:ENSMUSP00000111059.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098862Re-query CCDS DB by Protein ID:ENSMUSP00000111059
Original member Current member NCBI NM_001361532.1 NP_001348461.1 Accepted alive Link to Nucleotide Sequence:NM_001361532.1Link to Protein Sequence:NP_001348461.1Re-query CCDS DB by Nucleotide ID:NM_001361532Re-query CCDS DB by Protein ID:NP_001348461Link to BLAST:NP_001348461.1
Original member Current member NCBI NM_009729.4 NP_033859.1 Accepted alive Link to Nucleotide Sequence:NM_009729.4Link to Protein Sequence:NP_033859.1Re-query CCDS DB by Nucleotide ID:NM_009729Re-query CCDS DB by Protein ID:NP_033859Link to BLAST:NP_033859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348461.1 155 P63082 155 100% 0 0
NP_033859.1 155 P63082 155 100% 0 0

Chromosomal Locations for CCDS 28476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24164404 24164608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24164699 24164882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24169206 24169284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGCTGACATCAAGAACAACCCCGAATATTCTTCGTTTTTCGGTGTCATGGGCGCCTCGTCCGCCATGG
TCTTCAGCGCCATGGGAGCCGCCTATGGCACAGCCAAGAGTGGCACTGGCATCGCAGCCATGTCAGTCAT
GAGGCCAGAGCTGATCATGAAGTCCATCATCCCAGTGGTTATGGCTGGGATCATCGCCATCTACGGCCTG
GTGGTGGCAGTACTTATCGCTAACTCCCTGACTGATGGCATCACCCTCTACAGGAGTTTTCTTCAACTGG
GTGCTGGCCTGAGTGTGGGGCTGAGTGGCCTGGCTGCTGGCTTTGCCATTGGCATCGTCGGAGATGCTGG
TGTTCGGGGCACTGCCCAGCAGCCTCGACTGTTCGTGGGCATGATCCTGATCCTCATCTTTGCGGAGGTG
CTTGGCCTCTACGGTCTCATCGTGGCCCTAATCCTCTCCACAAAGTAG

Translation (155 aa):
MADIKNNPEYSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGL
VVAVLIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEV
LGLYGLIVALILSTK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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